| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1816 |
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| Symbol | |
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| ID | 5712806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1894133 |
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| End bp | 1895479 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267738 |
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| Product | mscS family protein |
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| Protein accession | YP_001533159 |
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| Protein GI | 159044365 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.316092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.285124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGGCA CCGAACAGAC GATCATCGAG CAGGAGTTCG AGAGTTTTGC CCAGGCCGCA
TGGCTGCGGC TGCAACAGGT GGTGGCCTGG TTCGACGCCA ACCTGCTGAC CGTCGCCTCG
GCTTACCAGC TGGTGGCGAT CGCCGTCACG CTGGCGCTGG CCTGGCTGCT GCACAGCCGG
TTCAAGCGCC TGCTGCAGGA GCTCGGCCAG GGGCGCAAGC TCGCCCCCGC GGTGCAGCGC
CTGCTGCGCA CCGTCGCGTC GATCTCGATG CCGGTGGTCT GGGTGATCTT CCTGGCGCTC
GCGCGCACCG GGTTCGAGAG CGCGGGCATG CCGATTCCCT TCCTGCGGCT GGTCTCCAGC
CTGCTTCTGG CCTTCATCGT CATCAACATC ATCTCGATCT TCATCGCCTC GACCTATTGG
AGCCGCGTGT TCTCCTGGGT CGCCTGGGGG GCGGCGGCAC TGAACGCGGT CGGCCTGCTC
GACGTGGTGA TCGAGTGGCT CCAGGCCACC GCCCTGACCG TGGGCGCGGT CGAGATCAGC
GCCTGGAGCA TCGTCAAGGC CCTGATCCTC GCCGCGCTCC TGCTGTGGGG GGCGAACGCG
GTTACCGGCA CGGTGGAGCG GCGCCTTGAG CATACCGGCA AGATGAGCTC GGCCCTGCGC
CTGCTGGTGG TGCGGCTCTT GCGGCTGGTG CTGCTGACGC TCGCGGTGAT CGTGGCCATC
GCCGCCGTGG GGATCGACCT GACCGCCTTC GCGATCTTCT CAGGCGCGCT GGGTGTCGGC
GTCGGCCTCG CCCTGCGCCG CACCTTCGAG AACCTGATCG CCAGCTACTC CCTGCTGGCC
GACGAGTCGA TCAAGCCCGG CGACGTGATC GAGATCGAAA CCGTCAGCGG CCCGACCTAC
GGCCAGGTGC GCAAGATGAC GACCCGCTAC GTGGCGGTGA TGACCCGCGA CGGGACCGAG
ACCCTGATCC CCAACGAGCT GCTGATGTCC AGCCCGCTCA CCAACTGGTC CCACACCGCC
AAGCCGATCC GCCGCCGCGT CCCCGTCGGG GTCGCCTATT CCGCCGACAT CCCGCTCGCC
CAACGGCTCT GCGTCGAGGC CGCGGGCGAG GTCCTGCGGG TGCTGGCCCA TCCCGAGCCG
CGCTGCCTGA TGCGCGGCTT CGGCGACAGT GCCATCGACC TGGAGCTGCG CTTCTGGATC
AACGATCCCG AGAACGGCGT GGCCAACGTC ACCTCCGACG TGCTTCTGCT GATCTGGGAG
AAATTCCAGG CCCACGGCAT CGAGGTGCCC TTCCCCCAGC GCGACGTCAC CCTGCGCGGC
CCGGTCCGCC TCGACACCCC GCCCTGA
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| Protein sequence | MDGTEQTIIE QEFESFAQAA WLRLQQVVAW FDANLLTVAS AYQLVAIAVT LALAWLLHSR
FKRLLQELGQ GRKLAPAVQR LLRTVASISM PVVWVIFLAL ARTGFESAGM PIPFLRLVSS
LLLAFIVINI ISIFIASTYW SRVFSWVAWG AAALNAVGLL DVVIEWLQAT ALTVGAVEIS
AWSIVKALIL AALLLWGANA VTGTVERRLE HTGKMSSALR LLVVRLLRLV LLTLAVIVAI
AAVGIDLTAF AIFSGALGVG VGLALRRTFE NLIASYSLLA DESIKPGDVI EIETVSGPTY
GQVRKMTTRY VAVMTRDGTE TLIPNELLMS SPLTNWSHTA KPIRRRVPVG VAYSADIPLA
QRLCVEAAGE VLRVLAHPEP RCLMRGFGDS AIDLELRFWI NDPENGVANV TSDVLLLIWE
KFQAHGIEVP FPQRDVTLRG PVRLDTPP
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