Gene Dshi_1773 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1773 
Symbol 
ID5713340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1839968 
End bp1840660 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content67% 
IMG OID641267691 
Productputative metalloprotease 
Protein accessionYP_001533116 
Protein GI159044322 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.480116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAAAC TCACACCTCT TCTCTTGGCG CTGGCCTGGG GGCTCGGGCT CTACTGGATC 
GGCGCGAAAC GCACCGCGCG GGAGTTGGAC AAGCGCTCCA CCGAGTTGCG CGACCGCGAG
TTGGGCCGGT TGACCGACCG GATGGCCAAG GCGCTGGATC TCGAGCAGAT CAAGGTCAAC
ATCTACGAAG TGGATCCGGT GAACGGGCTG GCGGCACCCG ATGGGCGGAT CTTCATCACC
CGGGGGTTTT TCCGCAAGTA CCAGACCGGG GAGGTGACGG CGGCCGAGAT GGCCTCGGTC
ATCGCCCACG AGCTGGGCCA TGTGGCACTG GGGCATTCCA GGCGGCGGAT GATCGATTTT
TCCGGCCAGA ACGCGATCCG CGTGGCGCTG GCCACGGTGC TGGGGCGGTT CATCCCGTTC
GTCGGCGTGG CGATCGCGAA CATGCTGGTG AGCCTTCTGG CGGCGCGGCT GTCGCGGGGC
GACGAGTACG AGGCGGATGC CTATGCCTCG GCCCTGCTGG TGAAGGCCGG GATCGGGACG
GAGCCGCAGA AGACCCTGTT TCGCAAGCTC GAGGGGTTGA CCACCGGGGC CGGGCGGGCG
CAGGCGCCGG CCTGGCTGAT GAGCCATCCC AAGACCGAGG AGCGGATCAA GGCGATCGAG
GCGCTGGAGA AGCGCTGGGT CGTGCCGGGC TGA
 
Protein sequence
MLKLTPLLLA LAWGLGLYWI GAKRTARELD KRSTELRDRE LGRLTDRMAK ALDLEQIKVN 
IYEVDPVNGL AAPDGRIFIT RGFFRKYQTG EVTAAEMASV IAHELGHVAL GHSRRRMIDF
SGQNAIRVAL ATVLGRFIPF VGVAIANMLV SLLAARLSRG DEYEADAYAS ALLVKAGIGT
EPQKTLFRKL EGLTTGAGRA QAPAWLMSHP KTEERIKAIE ALEKRWVVPG