| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1766 |
|---|
| Symbol | |
|---|
| ID | 5713333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1832580 |
|---|
| End bp | 1834175 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641267684 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533109 |
|---|
| Protein GI | 159044315 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.905557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGACG GAATGGATCA GTCGGCGCGC ACGGGCAGGC CGCAGGTCGT CTGGGGCGCT
TTGGTGGCCC TGGGTCTTGT GGCCGGGGGC GTGGTGCTGT GGAGCCTGTC CGCGCCTGTG
CCGGAGGCCG AGGATACGCC GACGGAAAGT ATCGCGAATG CGCCGCCCGA AGCGCCCGTC
GCCTTGGACG AGACCATCGA GGCGCCGCCG CAGGCGACTC CGGTGGAGAT TGCCGAGCCC
GCCCCGGAGG TCGTGCAGGA GGCCCCGGCA CCTGCGGAGA CGGCGGCGGT GGCCGTGGAA
CCCGAACCCG CGCCTGTGCC GGCTGCCGAA GCCCCCAGCG CGGCAGAGCC GGTCTCGCCT
GCGCCCGCGG ATGTCGCAGA TCCTGCGGCA GCGCAGGTGG AGACCGCCGA GACGGCCGAA
ACGCCCGAGG ATGCGGCACC TGCTGCCCCG GCCGCCGATC CGCCGCGCTT CGATCTGGTG
CGCGTCGACC GGGCGGGGAG TGCAGTTGTC GCGGGCCGCG CGATGCCCGG CGGGGTGGTG
CGTGTGCTGC TCGACGGGGC CAAGGTGGCC GAGACCGTGG CCGATGGGCG CGGCAGTTTC
GTGGCGCTGT TCACCCTCGA TCCGTCGGCA AAGGCCCGGG CGCTGACCCT CGAAAGCGAT
GGCGAGGCCG GGGATGCGGT GGTGTCGGTG GAGACGGCGA TGGTGTCGCC TTTCACGGGC
CCGGTGGCGG CGCGCGCGGT CGATCCCGAA CCCGCCCCGA GGGATCAGGC GGCGACTGCG
GACGCCTCCG GACCGCGGGC CGATGGTCCG GCCCGGGCAC CGGAGACAGC GTCTCTGGGG
GATCTGCCAG AGCCTCAGGT GGATATCGAC ACCGCGCCTG CGATGGCGTC ACCCGCGCCG
GACGGTGCCT CCGCCCCGCC CGCGCGGGGA TCGGCCCCGT CGGTCCTGAT CTTGTCGGAG
GCGGGCGCGC GCCCAGCGGC CCCGCCCGCG CAACCGGACC GGCCCGGAGT GTCCGGAGCG
GCCAATGTGG TGATCGACAC GATTTCCTAT GATGCGGAGG GCGAGGTGCT GCTGGCCGGG
CGCGCGGTGC CCGATGCGCT GGTGCGGCTT TACCTGAACA ACGACCTCGT GGAGACCGCG
GAGGTTTCGC CCGAGGGGCT GTGGGAGGCG CGTGTGGCCG GGATCGCCCA AGGGGTCTAT
ACCCTGCGCG CCGACGAAGT GACGCCGGAT GGCAAGGTGA TCTCGCGCTT CGAGACGCCG
TTCGAGCGGG CCTTGCGCGC CGATGCGGTG CTGGCGGCGG AGGCCGCGGC GGAGGCGGCA
GAGGCCGAGA CCGCCGCTGC CACCGTGGCT GAGGTTCCAC CGGGTCAGAC CGCCGCGCCG
GGCGAGGTGC CGGTGCTGGA GGCGGCGCCG GGTGCGCTGG CGGTGGCCGG GGTGGTGACG
GTGCAGCCGG GCTTCACCCT GTGGCAGATC GCGCGGGAAA ACTACGGCGA CGGGTTCCAG
TATGTGCGCG TGTTCCAGTC CAACCGGGAC CGGATCCGCG ACCCGGATCT GATCTATCCG
GGCCAGGTCT TTGCCGTGCC GCGCGAGACC CCCTGA
|
|---|
| Protein sequence | MQDGMDQSAR TGRPQVVWGA LVALGLVAGG VVLWSLSAPV PEAEDTPTES IANAPPEAPV
ALDETIEAPP QATPVEIAEP APEVVQEAPA PAETAAVAVE PEPAPVPAAE APSAAEPVSP
APADVADPAA AQVETAETAE TPEDAAPAAP AADPPRFDLV RVDRAGSAVV AGRAMPGGVV
RVLLDGAKVA ETVADGRGSF VALFTLDPSA KARALTLESD GEAGDAVVSV ETAMVSPFTG
PVAARAVDPE PAPRDQAATA DASGPRADGP ARAPETASLG DLPEPQVDID TAPAMASPAP
DGASAPPARG SAPSVLILSE AGARPAAPPA QPDRPGVSGA ANVVIDTISY DAEGEVLLAG
RAVPDALVRL YLNNDLVETA EVSPEGLWEA RVAGIAQGVY TLRADEVTPD GKVISRFETP
FERALRADAV LAAEAAAEAA EAETAAATVA EVPPGQTAAP GEVPVLEAAP GALAVAGVVT
VQPGFTLWQI ARENYGDGFQ YVRVFQSNRD RIRDPDLIYP GQVFAVPRET P
|
|---|
| |