| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1733 |
|---|
| Symbol | prfA |
|---|
| ID | 5713300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1799734 |
|---|
| End bp | 1800789 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641267651 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_001533076 |
|---|
| Protein GI | 159044282 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.520333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCCCA CGGAAAAACT CGCCCAGATC ACGGAACGCT TCGAGTATAT CGAAGCGCGC
ATGGCGGCGG GTGCCGCGGG CGAGGATATC GCGGCCCTCG GGCGCGAATA TGCCGAGCTT
AAGCCCGTGG TGGCCGAGAT CGCCGCCTAT AGCCGGGCGC GCGCCGACCT GGCCGAGGCC
GAGGCGATGC TGGACGATCC GGAAATGCGC GCCCTCGCCG AAGAAGAGAT CCCCGCGCTC
AAGGCCCGTA TCCCGGAGAT GGAGCAGGCC CTGCGCCTGG CCCTTCTGCC CAAGGACGCC
GCCGACGCCC GCCCCGCGAT GATCGAGATC CGTCCCGGCA CCGGCGGGGA GGAGGCGGCG
CTGTTTGCCG GCGACCTGCT GCGCATGTAT CAGCGCTATG CCGAGGCGCA GGGCTGGCGG
TTTCAGATCG TGTCCGAAAG CCTGACCGAG CTTGGCGGCA TAAAAGAAGT GATCGCCCAT
GTCTCCGGCA GCGGCGTCTT CGCCAAGCTG AAATACGAAA GCGGGGTGCA CCGGGTGCAG
CGCGTGCCCG TCACCGAATC CGGCGGGCGC ATCCACACCT CCGCCGCCAC GGTGGCGGTA
CTCCCCGAGG CCGAGGCGGT GGATATCGAC ATCCCCGCCT CCGATATTCG CATCGACACC
ATGCGCGCCA GCGGGGCAGG CGGCCAGCAT GTGAACACCA CCGATTCGGC TGTGCGGATC
ACCCATATCC CCACGGGTCT GGTGGTCACC AGCTCCGAGA AATCCCAGCA TCGCAACCGC
GACATCGCCA TGCAGGTGCT GCGCGCGCGG CTCTATGACC TGGAACGTCA GCGCGCCGAT
GCCGAACGCT CGGCCGCGCG CAAGGGGCAG GTGGGCTCCG GCGATCGGTC CGAGCGCATC
CGCACCTACA ACTTCCCGCA AGGCCGCATG ACAGACCACC GGATCAATTT GACGCTCTAC
AAGCTCGACC AGGTGATGCA GGGGGATCTC GACGAGGTGA TCGCAGCCCT GGCCGCCGAC
GACCAGGCCC GGCTGCTGGC GGAGGTCGAG GGGTGA
|
|---|
| Protein sequence | MVPTEKLAQI TERFEYIEAR MAAGAAGEDI AALGREYAEL KPVVAEIAAY SRARADLAEA
EAMLDDPEMR ALAEEEIPAL KARIPEMEQA LRLALLPKDA ADARPAMIEI RPGTGGEEAA
LFAGDLLRMY QRYAEAQGWR FQIVSESLTE LGGIKEVIAH VSGSGVFAKL KYESGVHRVQ
RVPVTESGGR IHTSAATVAV LPEAEAVDID IPASDIRIDT MRASGAGGQH VNTTDSAVRI
THIPTGLVVT SSEKSQHRNR DIAMQVLRAR LYDLERQRAD AERSAARKGQ VGSGDRSERI
RTYNFPQGRM TDHRINLTLY KLDQVMQGDL DEVIAALAAD DQARLLAEVE G
|
|---|
| |