| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1709 |
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| Symbol | mscS |
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| ID | 5713275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1776333 |
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| End bp | 1777817 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267626 |
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| Product | small conductance mechanosensitive channel |
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| Protein accession | YP_001533052 |
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| Protein GI | 159044258 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0466336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCGC GCGTCAGGAT TATGAGTTTT CGGAAACGCT TTGGCTGCAT GATGCTTGCG
CTGGCCGTTC TGGTCGTGGT GTCGGTCGGC GGGGCGTTCG CCCAGTCCGC CGACCCCGCC
CCGGCCGAGG TGTCGGCACA AGAGGATGCC GAGGCCGCGC CGCCCGAGGA CAACGCGCCG
GCCTATCCTG CGGGTCTCGA CGATCCGACA CTCGAAATCG AGGAGCTGCG CCTGCGGCTG
CTGCCGCTGA CGGTCGATCA GCTTACGGAG CTTGCCGCTG CGTGGCAGGG GATCGTGGCC
GGACAAACCC AGGCGGTGGT CGATGAATCG CTTGCGCTGG AGCGTCTGCC GACGCAGGAG
CAGGAGGCCG CCCGGGCCCG CGTTGTCGCG TTGACGGAGA CACGCAATGC CGGGTTCGAT
CGCTTCTCGG AAGTCGTGAG CAATCTGGCG CGCAAGGGCG GGGACCCGGC GACGGTGGAA
ACCTACCGGG CCTATCGATC CTCCATCGTC GTTCAGGAAA AGCAGGAGGC GGATTGGCGG
ACGCTGGCCG AAGGCGCGTT GAGCTGGGCG GTTGCGCGCG ATGGCGGCGT GCAATTGGCG
ATCCGCATCG CGGTGATCGG CGGCGCGATA TTCGCGCTGC TGCTCGTGGC CCGGATCGTG
CGGGGGTATG CCCGGCGGAT GTTCGGGAAG TTACCGAACT TGTCCAAGCT GTTGCAGGCG
TTCCTGGCGA CGATTGTCTA TTGGCTGACC ATTGCGGTGG GGTTGATGGT GGTCCTGTCT
TCGCTGGGTG TGGACATCAC GCCGCTCTTC GCGCTGTTCG GCGGTGGTGC CTTCATCCTG
GCCTTTGCCA TGCAGGAGAC CCTGAGCAAC CTGGCGGCGG GCGTGATGAT CATGATCAAC
CGTCCCTTCG ATGAGGGGGA TTATGTCGAT GTCGCGGGTC TTGGCGGGAC GGTGAAGAAC
GTCTCTATCG TCTCGACCCA GATCGTGACG CCGGACAACC AGATCATCGT GATCCCGAAC
TCCAAGGTCT GGGGCGATGT CATCACCAAC GTCACGGCGT CCGATACTCG CCGGGTCGAT
ATGGTGTTCG GCATCGGCTA TGGCGATTCG ATCCAGGAGG CCCAGGCCGT TCTGGAGGAG
GTGGTTTCGG GCCATCCCCT GGTGTTGAAG GATCCCGCCC CGGTGATCCG CGTGAACGAA
CTGGCCGACA GTGCCGTGAA CTTCATCGTG CGGCCCTGGA CCAAAACCAC CGATTACTGG
GCGGTTTATT GGGACCTGCA GCGCGCGGTG AAAGAGGCGT TCGATGCCAA GGACATCTCG
ATCCCGTTCC CGCAGACCGA CATGCATCTC TACATGGCGC CGAAATCGTT GCCGGCGGCG
GTCGATGGGC TGCCCTTGGC GCGGCAGACC TCCACCGGGC GCGGTCCGGG GCGCGACGAC
CCGGGTCCGG ACGACGCCGC AGAGCCCGCG CCGGCCGCAG GCTGA
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| Protein sequence | MAARVRIMSF RKRFGCMMLA LAVLVVVSVG GAFAQSADPA PAEVSAQEDA EAAPPEDNAP
AYPAGLDDPT LEIEELRLRL LPLTVDQLTE LAAAWQGIVA GQTQAVVDES LALERLPTQE
QEAARARVVA LTETRNAGFD RFSEVVSNLA RKGGDPATVE TYRAYRSSIV VQEKQEADWR
TLAEGALSWA VARDGGVQLA IRIAVIGGAI FALLLVARIV RGYARRMFGK LPNLSKLLQA
FLATIVYWLT IAVGLMVVLS SLGVDITPLF ALFGGGAFIL AFAMQETLSN LAAGVMIMIN
RPFDEGDYVD VAGLGGTVKN VSIVSTQIVT PDNQIIVIPN SKVWGDVITN VTASDTRRVD
MVFGIGYGDS IQEAQAVLEE VVSGHPLVLK DPAPVIRVNE LADSAVNFIV RPWTKTTDYW
AVYWDLQRAV KEAFDAKDIS IPFPQTDMHL YMAPKSLPAA VDGLPLARQT STGRGPGRDD
PGPDDAAEPA PAAG
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