| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1611 |
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| Symbol | xerD |
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| ID | 5712755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1674956 |
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| End bp | 1675882 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267526 |
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| Product | tyrosine recombinase |
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| Protein accession | YP_001532954 |
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| Protein GI | 159044160 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.4794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC ATTGGATCGA CGCATTTCTC GATGCCCAGG CGGCAGAGCT GAACGCGGCT
GAGAATACGC GCCTTGCCTA TGCCCGCGAC CTGATGGATT TCCAGGGCCA TATACGCCGT
CGGGGGCTGG ACTTCGACCA GGTCCAGCGC GCCGATATCG AAACCTATCT CATCGCCTGC
TCTGATGCCG GTCTCAGCCA GGCCACTCGC GCCCGTCGGC TGTCGGCGAT CCGGCAACTC
TATCGTTTCG CATATGAGGA AGGCTGGCGC ACCGACAATC CCAGCCTGCA GATCAAGGGA
CCGGGGCGCG CGAAACGCCT TCCCAAGACC TTGTCGGAGG CGGATGTGGA TCGTTTGCTC
GCGGCGGCGC GGAACACGGG GCGCAGTCCG TCCGACCGGC AGCGCAATGC CTGCATGCTG
GAATTGCTCT ATGCGACCGG CTTGAGGGTG ACGGAGTTGT GCGGACTACC GGTCGCGGCT
GTGCGCGGCG ATCCGCACCT GATCCTCGTG CGCGGCAAGG GCGGCAAGGA GCGGATGGTG
CCCCTGTCGA CACCAGCGCG CACCGAATTG CAGGCTTGGC TGAAAGTTCG CGACGCTGCC
GAGCAAACCG CGATCAGCAA GGGGGCGGCG CCCTCGAAAT ACCTCTTTCC GTCACGCGGC
AAGCTGGGGC ATCTGACCCG GCACCGGTTC TACGCGCTGA TCAAGGATAT CGCCGTGGCA
GCGGGCGTGG ACCCGTCCGG GGTCACGCCG CACACCTTGC GCCATGCGTT CGCGACACAT
CTCTTGGCAC GGGGCGCGGA CCTGATGTCG ATTCAGGCGC TTCTGGGTCA TGCGGATGTG
GCGACCACCG AGATCTACAC ACATGTGCTG GACGCGCGGC TCAGGGAACT GGTGCTGACC
CATCACCCCC TGGCGACAAA GGGCTAG
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| Protein sequence | MSLHWIDAFL DAQAAELNAA ENTRLAYARD LMDFQGHIRR RGLDFDQVQR ADIETYLIAC
SDAGLSQATR ARRLSAIRQL YRFAYEEGWR TDNPSLQIKG PGRAKRLPKT LSEADVDRLL
AAARNTGRSP SDRQRNACML ELLYATGLRV TELCGLPVAA VRGDPHLILV RGKGGKERMV
PLSTPARTEL QAWLKVRDAA EQTAISKGAA PSKYLFPSRG KLGHLTRHRF YALIKDIAVA
AGVDPSGVTP HTLRHAFATH LLARGADLMS IQALLGHADV ATTEIYTHVL DARLRELVLT
HHPLATKG
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