| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1593 |
|---|
| Symbol | metA |
|---|
| ID | 5712737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1659426 |
|---|
| End bp | 1660343 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641267508 |
|---|
| Product | homoserine O-succinyltransferase |
|---|
| Protein accession | YP_001532936 |
|---|
| Protein GI | 159044142 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1897] Homoserine trans-succinylase |
|---|
| TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.695076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.229155 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCA AGATCCCCGA GACCCTGCCT GCCTTCGATG TGCTGTCCTC CGAAGGAGTG
ATGGTCATGG GCCAGGGGCG CGCGGATCGC CAGGACATCC GGCCCCTGCA GATCGGGCTT
CTCAATCTGA TGCCCAAGAA GATCCAAACC GAGACCCAGT TCGCCCGGCT GATCGGCGCC
ACGCCCTTGC AGATCGACCT GACCCTGATC CGGATGACCG AGCATCAGTC CAAACACACC
TCAGCCGCGC ATATGGAGGC GTTCTATCGC CCGTTCGCCG AGGTCCGAGA CCGCAAGTTT
GACGGGCTGA TCATCACCGG CGCCCCCATC GAACATCTGG AGTTCGCGGA TGTGACCTAC
TGGGACGAGC TGCGCGAGGT CTTCGCCTGG ACCCAGACCA ATGTACACGC GACCTTCGGC
GTTTGCTGGG GCGGGATGGC GATGATCAAC CATTTCCACG GAGTGCAGAA GCACATCCTC
CCCGCCAAGG CGTTCGGCTG CTTCCGGCAC CGCAACCTTG CACCCGCCTC CCCCTACCTG
CGCGGGTTTT CGGACGATTG CGTCATTCCC GTGAGCCGCT GGACCGAGAT GAAACAATCG
GAGATCGACG CGGTACCCGG TTTGACCACA CTCCTGGGCT CGCCCGAGGT TGGTCCGTGC
CTGGTCGAGG ACCCCGGGCA CCGCGCGCTC TATATCTTCA ACCATTTCGA GTATGACACC
GGCACGCTCA AGGAAGAATA CGACCGGGAT GTGGAGAACG GCACGCCGAT CAACGTTCCC
ACGAATTACT ATCCCGACGA CGACCCCGCT CGCGCACCGC TCAATCGGTG GAGATCGCAT
GCGCATCTGC TATATGGCAA CTGGTTGAAC GAGATATACC AGACCACCGA ATATGACCTC
GAGAAGATCG GTACTTAA
|
|---|
| Protein sequence | MPIKIPETLP AFDVLSSEGV MVMGQGRADR QDIRPLQIGL LNLMPKKIQT ETQFARLIGA
TPLQIDLTLI RMTEHQSKHT SAAHMEAFYR PFAEVRDRKF DGLIITGAPI EHLEFADVTY
WDELREVFAW TQTNVHATFG VCWGGMAMIN HFHGVQKHIL PAKAFGCFRH RNLAPASPYL
RGFSDDCVIP VSRWTEMKQS EIDAVPGLTT LLGSPEVGPC LVEDPGHRAL YIFNHFEYDT
GTLKEEYDRD VENGTPINVP TNYYPDDDPA RAPLNRWRSH AHLLYGNWLN EIYQTTEYDL
EKIGT
|
|---|
| |