Gene Dshi_1574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1574 
SymbolntrC 
ID5712718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1640962 
End bp1642326 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content66% 
IMG OID641267489 
Productnitrogen assimilation regulator receiver protein 
Protein accessionYP_001532917 
Protein GI159044123 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.281869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0357096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGGCA CCGTTCTGGT CGCCGATGAC GACCGCACGA TCCGCACCGT TCTGACCCAG 
GCGCTCACCC GCGCCGGCTG CAAGGTCCAT GCGACTTCCA GCCTGATGAC CCTCATGCGT
TGGGTCGAAG AGGGCAAGGG CGACCTGGTG ATCTCGGATG TGATCATGCC CGATGGCAAC
GGGCTGGAAA CGCTGCCCAA GATCACCGAG GCCCGGCCCG GCCTGCCGGT GATCGTGATC
TCGGCGCAGA ACACCATCAT GACCGCGATC CAGGCAGCGG AGGCCGAGGC CTATGACTAC
CTGCCCAAAC CCTTCGACCT GCCGGACCTG ATGAAGCGCG CCGCCCGCGC GCTGGAGGTC
AAGCGCCGCG CGCCACCGCC CAAGCTCAGC TCCGAGAGCC CGAACGAGGA TTTGCCGCTC
GTGGGGCGCA CGCCGCAGAT GCAGGCGCTC TACCGGCTGG TGGCGCGGGT GATGAACACC
GACCTGCCGG TGCTGATCAC CGGCGAGAGC GGGACGGGCA AGAGCCTGAT CGCCCGCGCG
ATCCACGACT TCTCGGACCG CCGCACGCTG CCCTTCGTGG TGGCGGGGGC GGCGGACCTG
GCCGGGGCCG ACGGCCCGTC GACCCTCGTG GCCAAGGCCC GGGGCGGCTC GATCCTGTTC
GACGAAGTGG GCGATCTCGA CGACGAAGCC CAGGGTCGCA TCGTGCGGAT GCTGGACCAG
TTCGGCGACA ATTCCCCGCG CATCATGTCC ACCTCGCAAA AGGACCTGAT GCAGAAGATG
GAGGCCGGCA TCTTCCGACA GGATCTGTTC TACCGACTCG GCGGTGTGAC GATCAACGTG
CCGTCCCTGC GCGAACGGGT GGATGACATC CCGCTGCTGG CGACCCATTT CCTGGCTCGG
GCCGAGCGGG ATGGCGCTCC GCTCAAGCGC CTCTCCGAGG CCGCCAGCGA CATGGTCCGC
GCCTATTCCT GGCCTGGCAA TGTCCGGCAG CTTGAAAACG CCATGAAGCG GCTGGTCATC
ACCGCCCAGG AGGACGAGAT CGGGCGCGCG GATGTGGAAA TGGTGCTCGG CAGCCAGCCC
GCGATCGAGC CGCTGATGGG CGGGGGCGAG GCCGACAAGC TCAGCGCCTC GGTCGAAAAG
CACCTGCGCC GGTATTTCGA CCTGCATGGT GGGGTACTGC CGCCGCCGGG CCTTTACCAG
CGGATCCTGC GCGAGGTAGA GACCCCTCTG ATCGAGATCG CCCTCGATGC GACCGGCGGG
AACCAGGCCA AATGCGCCGC TCTGCTCGGG ATCAACCGCA ATACCTTGCG CAAGAAGATC
ACCGATCTGG ATATTCAGGT GACACGCCGG CGCAAATTGA TGTAA
 
Protein sequence
MDGTVLVADD DRTIRTVLTQ ALTRAGCKVH ATSSLMTLMR WVEEGKGDLV ISDVIMPDGN 
GLETLPKITE ARPGLPVIVI SAQNTIMTAI QAAEAEAYDY LPKPFDLPDL MKRAARALEV
KRRAPPPKLS SESPNEDLPL VGRTPQMQAL YRLVARVMNT DLPVLITGES GTGKSLIARA
IHDFSDRRTL PFVVAGAADL AGADGPSTLV AKARGGSILF DEVGDLDDEA QGRIVRMLDQ
FGDNSPRIMS TSQKDLMQKM EAGIFRQDLF YRLGGVTINV PSLRERVDDI PLLATHFLAR
AERDGAPLKR LSEAASDMVR AYSWPGNVRQ LENAMKRLVI TAQEDEIGRA DVEMVLGSQP
AIEPLMGGGE ADKLSASVEK HLRRYFDLHG GVLPPPGLYQ RILREVETPL IEIALDATGG
NQAKCAALLG INRNTLRKKI TDLDIQVTRR RKLM