Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1574 |
Symbol | ntrC |
ID | 5712718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1640962 |
End bp | 1642326 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267489 |
Product | nitrogen assimilation regulator receiver protein |
Protein accession | YP_001532917 |
Protein GI | 159044123 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.281869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0357096 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGGCA CCGTTCTGGT CGCCGATGAC GACCGCACGA TCCGCACCGT TCTGACCCAG GCGCTCACCC GCGCCGGCTG CAAGGTCCAT GCGACTTCCA GCCTGATGAC CCTCATGCGT TGGGTCGAAG AGGGCAAGGG CGACCTGGTG ATCTCGGATG TGATCATGCC CGATGGCAAC GGGCTGGAAA CGCTGCCCAA GATCACCGAG GCCCGGCCCG GCCTGCCGGT GATCGTGATC TCGGCGCAGA ACACCATCAT GACCGCGATC CAGGCAGCGG AGGCCGAGGC CTATGACTAC CTGCCCAAAC CCTTCGACCT GCCGGACCTG ATGAAGCGCG CCGCCCGCGC GCTGGAGGTC AAGCGCCGCG CGCCACCGCC CAAGCTCAGC TCCGAGAGCC CGAACGAGGA TTTGCCGCTC GTGGGGCGCA CGCCGCAGAT GCAGGCGCTC TACCGGCTGG TGGCGCGGGT GATGAACACC GACCTGCCGG TGCTGATCAC CGGCGAGAGC GGGACGGGCA AGAGCCTGAT CGCCCGCGCG ATCCACGACT TCTCGGACCG CCGCACGCTG CCCTTCGTGG TGGCGGGGGC GGCGGACCTG GCCGGGGCCG ACGGCCCGTC GACCCTCGTG GCCAAGGCCC GGGGCGGCTC GATCCTGTTC GACGAAGTGG GCGATCTCGA CGACGAAGCC CAGGGTCGCA TCGTGCGGAT GCTGGACCAG TTCGGCGACA ATTCCCCGCG CATCATGTCC ACCTCGCAAA AGGACCTGAT GCAGAAGATG GAGGCCGGCA TCTTCCGACA GGATCTGTTC TACCGACTCG GCGGTGTGAC GATCAACGTG CCGTCCCTGC GCGAACGGGT GGATGACATC CCGCTGCTGG CGACCCATTT CCTGGCTCGG GCCGAGCGGG ATGGCGCTCC GCTCAAGCGC CTCTCCGAGG CCGCCAGCGA CATGGTCCGC GCCTATTCCT GGCCTGGCAA TGTCCGGCAG CTTGAAAACG CCATGAAGCG GCTGGTCATC ACCGCCCAGG AGGACGAGAT CGGGCGCGCG GATGTGGAAA TGGTGCTCGG CAGCCAGCCC GCGATCGAGC CGCTGATGGG CGGGGGCGAG GCCGACAAGC TCAGCGCCTC GGTCGAAAAG CACCTGCGCC GGTATTTCGA CCTGCATGGT GGGGTACTGC CGCCGCCGGG CCTTTACCAG CGGATCCTGC GCGAGGTAGA GACCCCTCTG ATCGAGATCG CCCTCGATGC GACCGGCGGG AACCAGGCCA AATGCGCCGC TCTGCTCGGG ATCAACCGCA ATACCTTGCG CAAGAAGATC ACCGATCTGG ATATTCAGGT GACACGCCGG CGCAAATTGA TGTAA
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Protein sequence | MDGTVLVADD DRTIRTVLTQ ALTRAGCKVH ATSSLMTLMR WVEEGKGDLV ISDVIMPDGN GLETLPKITE ARPGLPVIVI SAQNTIMTAI QAAEAEAYDY LPKPFDLPDL MKRAARALEV KRRAPPPKLS SESPNEDLPL VGRTPQMQAL YRLVARVMNT DLPVLITGES GTGKSLIARA IHDFSDRRTL PFVVAGAADL AGADGPSTLV AKARGGSILF DEVGDLDDEA QGRIVRMLDQ FGDNSPRIMS TSQKDLMQKM EAGIFRQDLF YRLGGVTINV PSLRERVDDI PLLATHFLAR AERDGAPLKR LSEAASDMVR AYSWPGNVRQ LENAMKRLVI TAQEDEIGRA DVEMVLGSQP AIEPLMGGGE ADKLSASVEK HLRRYFDLHG GVLPPPGLYQ RILREVETPL IEIALDATGG NQAKCAALLG INRNTLRKKI TDLDIQVTRR RKLM
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