| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1567 |
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| Symbol | hfq |
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| ID | 5712711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1632675 |
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| End bp | 1632953 |
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| Gene Length | 279 bp |
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| Protein Length | 92 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641267482 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001532910 |
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| Protein GI | 159044116 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.104021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0520931 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCAGGA ATTTGCGCGC ACCCAAAAGA AAAAAGGCAC ACAGAATGGC CGGCGACAAA
CAGAATTTGC AGGACGCTTT TCTCAACCAT GTTCGTAAAA CAAAGGTGCC CGTCACCGTT
TTTCTGATCA ACGGGGTGAA GTTGCAGGGG GTGATCACCT GGTTCGACAA CTTCTGCGTA
CTCCTGCGCC GCGATGGGCA AAGCCAACTG GTCTACAAGC ACGCCATCTC CACCGTGATG
CCGACCCAGC CCATCAGCCT GTACGAGGGC GACGACTGA
|
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| Protein sequence | MRRNLRAPKR KKAHRMAGDK QNLQDAFLNH VRKTKVPVTV FLINGVKLQG VITWFDNFCV
LLRRDGQSQL VYKHAISTVM PTQPISLYEG DD
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