| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1561 |
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| Symbol | mfd |
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| ID | 5712705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1622403 |
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| End bp | 1625885 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267476 |
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| Product | transcription repair coupling factor |
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| Protein accession | YP_001532904 |
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| Protein GI | 159044110 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.224407 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.305942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCCC AGACCGTTCC AACACATCTG CGCGTCACCG GCGTACCCGA AGGCTTCGAC
GCCCAGATCG TGCTGCGCGA GGCCTCCCGC CCGGACGGGC AGGCCGTGTT CGTCGCCCGC
GACGACAAGC GCATGGCCGC CATGGCCGCC GCCCTTGCGG TGACCGCGCC GCAGATCCCC
GTGCTGCGCT TTCCCGGCTG GGACTGCCTG CCCTATGACC GCTCCTCCCC GAACCCGGAG
ATCTCGGCCA CGCGCATGGC GACCCTCGCG GCGCTGGCCC ACGGGGTGCC GGGGCCCTTC
GTGCTGCTCA CCACCCTGTC GGCGGTCACC CAGCGTGTGC CCGCCCGCGC CACCCTGGCC
GAAGCCAGTT TTTCCGCCCA GGTCGGCGGG CGCATCGACG AGGCCGCGTT GCGGCAGTTC
CTGACCCGCA TGGGATTTGT CCAGGCCCCC ACCGTGACCG AGCCCGGCGA CTACGCGATC
CGCGGCGGCA TCATCGACAT CTTTCCGCCG GGCCAGTCCG GGCCCGTGCG GCTCGATCTG
TTCGGCGACG TGCTGGACGG CGCGCGCCGT TTCGATGCCG CCACCCAGCG CACGACCGAG
AAACTGGACG CGATCGAGCT GGCCCCGGTG TCCGAGATCA TCCTCGACCC CGCCGCCATC
ACCCGGTTCC GCCAATCCTA CCGGATCGAA TTCGGTGCCG CGGGCACCGA CGATCCGCTC
TACGAGGCGG TCTCGGCGGG CCGCAAACAT GCAGGGATGG AGCATTGGTT GCCCTTCTTT
CACGACCGGC TGGAGACATT GCTGGACTAC GTGCCCGAGG CCAGCCTGAT CCTGGACGAC
CAGTTCGAAG CGATGCATCT CAGCCGCTGG GAAGGGATCA AGGACCAGTA CGAAACGCGC
CGCCATGCGC TTGCCCAGAA GGGGCAGATG GGCACGGTCT ACAAACCTGC CCCGCCCGAA
ACCCTCTATA TCCCGCCGGC CGACGAGACA GCGCTACTGG CCACCAAGCG CACCCTGCAG
CTGTCGGTGC TGCCCTCGGC TTCGGGCCCC GGGGTGACCG ACGCGGGCGG GCGGATCGGA
CGCAACTTCG CGCCCGAGCG GCAGTCCCAG GCAACCGGGC TTTTCGAGGC GCTCGCCACC
CATATCACCG AAAAACGCAA GACCTCCCAG GTGGTGATCG CCAGCTGGTC CGAGGGCGCG
CGCGAACGGC TTCGCGGGCT GCTGGAGGAC CAGGACCTGT CCGGGCTGAC CGAGATCGCG
CGCCTGTCGG ACATCCCGGA GGGCACCGGC GGCGTCCACC TTCTGGTCTG GGCGCTGGAC
GAAGGTTTCG AGGGGCCCGA CCACCGGAGC ACACGCCTGA CGGTGATCTC CGAACAGGAC
GTGCTCGGCG ACCGGCTGAT CCGCACCACC AAGCGCAAGC GCCGGGCCGA GAATTTTTTG
CAGGAGGCCA CGAGCCTCAG CGCCGGCGAC CTGGTGGTCC ATGTCGATCA CGGGGTCGGG
GCGTTCAAGG GGTTGGAGAC GGTCACCGCC ATGGGTGCGC CCCATGAATG CCTGCTGCTG
GAATACGCGG GCGGCGACCG GCTCTACCTG CCGGTGGAAA ACATCGAGCT TCTGAGCCGC
TTCGGCCAGG AAATCGGCAT GCTCGACAAG CTGGGCGGCG GCGCCTGGCA GGCCAAGAAG
GCCAAGCTCA AGGAGCGCAT CCGCGAGATG GCCGACAAGC TCATCCGCAT CGCCGCCGAA
CGCGCGCTCC GCCGCGCCCC CATGCTGGAG CCGCCCCCGG ACATGTGGGA GGCATTCTCC
GCGCGCTTCC CCTACACCGA AACCGACGAC CAGCTCTCCG CGATCGAGGA CGTGGTCCAT
GACCTCGCCG CGGGCACGCC GATGGACCGG CTGATCTGCG GCGATGTGGG GTTCGGCAAG
ACCGAGGTCG CCATGCGCGC GGCCTTCATC GCGGCCCTCT CGGGCGTGCA GGTCGCGGTG
ATCGCACCCA CGACGCTGCT GGCGCGCCAA CACTACAAGA GCTTCGCCGA CCGCTTCCGC
GGCTTCCCGC TGGAGGTCCG GCCGCTCTCG CGCTTCGTGC CCGCGAAAGC CGCGGCCGAC
ACGCGCAAGG GCCTCGCCGC CGGGTCCGTG GACATCGTCG TGGGCACCCA TGCGCTCCTG
GCCAAGGGCG TCCGGTTTCA CAATCTCGGC CTGCTGATCA TCGACGAGGA ACAGCGCTTC
GGCGTCGGCC ATAAGGAACG CCTGAAAGAG CTGCGCTCGG ACGTCCATGT CCTGACCCTC
ACCGCGACCC CGATCCCGCG CACCCTGCAA CTCAGCCTCT CGGGGGTGCG GGACCTGTCG
ATCATCGGCA CGCCCCCCGT CGACCGCCTG TCGATCCGCA CCTACGTGTC CGAATTCGAC
CCCGTCACAT TGCGCGAAGC CCTCCTGCGC GAACACTACC GCGGCGGACA AAGCTTCTTC
GTCGTCCCAC GCATCAAGGA CATCCCCGAG ATCGAGGCGT TCCTGCGCGA CCAGGTGCCC
GAGGTCAGCT TCGTCGTCGC CCATGGCCAG ATGGCGGCGG GTGAGCTCGA CGACCGGATG
AACGCCTTTT ACGATGGCAA ATACGACGTC CTGCTGGCCA CGACCATCGT CGAGTCGGGC
CTCGACATCC CGACCGCCAA CACGATGATC ATCCACCGCG CCGACATGTT CGGGCTCAGC
CAGCTTTACC AGATCCGGGG CAGGGTGGGG CGCGCCAAGA CCCGCGCCTA TGCGTACCTG
ACCACCAAGC CCCGCATGAA ACTCACACCC GCGGCCGAAA AACGCCTCCG CGTGCTGGGC
AGCCTCGATA GCCTCGGCGC GGGCTTCACC TTGGCCTCCC AAGACCTCGA TATCCGCGGC
GCGGGCAACC TTCTGGGCGA GGCGCAGTCG GGCCAGTTCC GCGAGGTCGG CTTCGAGCTC
TACCAATCCA TGCTCGAAGA GGCGATCGGC AAGATCAAAT CCGGCAGCCT CGAAGGGCTC
ACCGACGATG ACGGCCAATG GGCGCCGCAG ATCAACCTCG GCGTGCCCGT GCTGATCCCC
GAGGCCTACG TGCCCGACCT CGACGTCCGG CTCGGCCTCT ACCGCCGCCT GTCGCAGTTG
ACCACCAAGG TGGAGCTCGA AGGCTTCGCC GCCGAGCTGA TCGACCGCTT CGGCAAGCTG
CCCAAGGAGG TCAACACGCT CCTGCTGATC GTGCGGATCA AGGCGATGTG CAAGAAGGCC
GGGATCGCCA AGCTCGATGG CGGCCCCAAG GGCGCGACCG TGCAGTTCCA CAACGACAAG
TTCGCCAATC CCGCGGGGCT CGTGAAATTC ATCAACGATC AGAAGGGGCT GGCCAAGGTA
CGCGACAACA AGATCGTCGT CCGCCGCGAC TGGGCCAAGG AAAGCGACCG GATCAAGGGT
GCGTTTTCCA TCGCTCGCGA CCTGGCGGTC GAGGCGAAAG CCGCCAAGGC CCAGGCAGGC
TGA
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| Protein sequence | MTSQTVPTHL RVTGVPEGFD AQIVLREASR PDGQAVFVAR DDKRMAAMAA ALAVTAPQIP
VLRFPGWDCL PYDRSSPNPE ISATRMATLA ALAHGVPGPF VLLTTLSAVT QRVPARATLA
EASFSAQVGG RIDEAALRQF LTRMGFVQAP TVTEPGDYAI RGGIIDIFPP GQSGPVRLDL
FGDVLDGARR FDAATQRTTE KLDAIELAPV SEIILDPAAI TRFRQSYRIE FGAAGTDDPL
YEAVSAGRKH AGMEHWLPFF HDRLETLLDY VPEASLILDD QFEAMHLSRW EGIKDQYETR
RHALAQKGQM GTVYKPAPPE TLYIPPADET ALLATKRTLQ LSVLPSASGP GVTDAGGRIG
RNFAPERQSQ ATGLFEALAT HITEKRKTSQ VVIASWSEGA RERLRGLLED QDLSGLTEIA
RLSDIPEGTG GVHLLVWALD EGFEGPDHRS TRLTVISEQD VLGDRLIRTT KRKRRAENFL
QEATSLSAGD LVVHVDHGVG AFKGLETVTA MGAPHECLLL EYAGGDRLYL PVENIELLSR
FGQEIGMLDK LGGGAWQAKK AKLKERIREM ADKLIRIAAE RALRRAPMLE PPPDMWEAFS
ARFPYTETDD QLSAIEDVVH DLAAGTPMDR LICGDVGFGK TEVAMRAAFI AALSGVQVAV
IAPTTLLARQ HYKSFADRFR GFPLEVRPLS RFVPAKAAAD TRKGLAAGSV DIVVGTHALL
AKGVRFHNLG LLIIDEEQRF GVGHKERLKE LRSDVHVLTL TATPIPRTLQ LSLSGVRDLS
IIGTPPVDRL SIRTYVSEFD PVTLREALLR EHYRGGQSFF VVPRIKDIPE IEAFLRDQVP
EVSFVVAHGQ MAAGELDDRM NAFYDGKYDV LLATTIVESG LDIPTANTMI IHRADMFGLS
QLYQIRGRVG RAKTRAYAYL TTKPRMKLTP AAEKRLRVLG SLDSLGAGFT LASQDLDIRG
AGNLLGEAQS GQFREVGFEL YQSMLEEAIG KIKSGSLEGL TDDDGQWAPQ INLGVPVLIP
EAYVPDLDVR LGLYRRLSQL TTKVELEGFA AELIDRFGKL PKEVNTLLLI VRIKAMCKKA
GIAKLDGGPK GATVQFHNDK FANPAGLVKF INDQKGLAKV RDNKIVVRRD WAKESDRIKG
AFSIARDLAV EAKAAKAQAG
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