| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1487 |
|---|
| Symbol | |
|---|
| ID | 5712666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1544432 |
|---|
| End bp | 1546513 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641267402 |
|---|
| Product | oligopeptide/dipeptide ABC transporter |
|---|
| Protein accession | YP_001532830 |
|---|
| Protein GI | 159044036 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
[TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.867925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.273968 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA CCTATGACGG CCCAATCCTC GAGATCGAGA ACCTTTCGAT CTCCTTCTTC
ACGCGCCTGC GGGAAATCCC GGCAGTGATG GATTTCTCCT GCACCGTGAT GCCTGGCGAG
GCCATGGGAC TGGTCGGAGA ATCCGGCTGC GGCAAGTCCA CCGTTGCCCT GGGGGTGATG
CAGGATCTCG GCGTGAACGG CCGCATCGTC GGCGGCACCA TCAAGTTCAA GGGCCGCGAC
CTGAACACCA TGAGCCCCGA AGAGCTCCGC CGCATCCGCG GCAAGGAGAT CGCCATGATC
TACCAGGAGC CCATGGCCTC GCTCAATCCG GCCATGCGGA TCGGCAAGCA GCTCATGGAG
GTGCCGATGA TCCACGAAGG CGTCTCCGAA GACGTCGCCT ACCAGCGTGC CCTCGACGTG
GTCACCGACG TGCGCCTGCC GGACCCCAAG CGCATCCTGA ACAGCTTTCC GCACCAGCTC
AGCGGCGGCC AGCAGCAGCG CATCGTCATC GCCATGGCGC TGATGGCCAA CCCGGCGCTG
CTGATCCTGG ACGAGCCGAC CACGGCGCTC GATGTGACCG TCGAGGCCGC GGTGGTCGAT
CTGGTGAAGG ACCTGGGCAA GAAATACGGC ACCTCGATGC TGTTCATCTC CCACAATCTC
GGCCTGATCC TGGAGACCTG CGACCGGCTC TGCGTGATGT ATTCCGGCGA GGCGGTCGAG
ACCGGCTCGA TCGAGGACGT GTTCGACGAG ATGCAGCACC CCTACACGCA GGCGCTGTTC
CGCTCGATCC CCCTGCCCGG CGCCGACAAG AACGCCCGCC CCCTGGTGGC CATCCCGGGC
AACTTCCCCC TGCCCCATGA GCGGCCCAAA GGCTGCAATT TCGGGCCGCA CTGCGACTAT
TTCCAACCCG GGCTCTGCGA CGCCCAGGAC ATCCGCATGC GCAAGATCCC CGGCGACGAC
CGCCACGGCT CCCGCTGCCT GCGCTTCGAG GAGATCGACT GGAACGCCCC GGTCGAGAAG
GCCGACCAGA CCGAGAAGCC CGAGCCGGGC CGCGTCGTGC TGAATATGGA CAACCTCAAG
AAATACTACG AGGTCGCGGC CTCGGCCCTC TTCGGCGGCA AGAACAAGAA GGTGGTGAAG
GCCAACGAGG ATCTCAGCTT CGAGGCGCGC GAGGGCGAAA CCCTCGCCAT CGTCGGCGAG
AGCGGCTGCG GCAAATCCAC CTTCGCCAAG GTCCTCATGG GGCTGGAGAC CGCCACCGAC
GGCACCATCC TGCTCGACAA CCGCGAGATC CAGGACATCG AGATCCAGGA CCGCGACACC
AAGACCGTGG CCGATGTGCA GATGGTATTC CAGAACCCGT TCGACACGCT CAACCCGTCG
ATGACCGTGG GCCGCCAGAT CATCCGGGCG TTGGAGATCT TCGGCGTGGG CGATACCGAG
GACGCCCGCA AGCAGCGGAT GCTGGAGCTG CTGGATCTGG TGAAGCTGCC CCGTGCCTTC
GCCAACCGCA TGCCCCGGCA GCTCTCGGGC GGCCAAAAAC AGCGCGTCGG CATCGCCCGC
GCCTTTGCCG GGGATGCCCG CATCGTGGTG GCCGACGAGC CGGTCAGCGC GCTCGACGTC
TCGGTGCAGG CCGCGGTCAC CGACCTGCTG ATGGAGATCC AGCGCCAGAA CCAGACCACG
CTCCTGTTCA TCTCCCATGA CCTGAGCATC GTGCGGTACC TCAGTGACCG GGTGATGGTG
ATGTATCTCG GCCATGTGGT CGAATTGGGC ACCACCGACG AGGTCTTCTC GCCCCCCTAT
CATCCCTATA CCGAGGCACT GCTCTCGGCC GTGCCGATCG CCGACACCAG CATCCAGAAG
GAGCGGATCG TGCTCGATGG CGACATCCCC TCGGCGATGA ACCCGCCGCC GGGCTGCCCG
TTCCAGACCC GCTGCCGCTG GAAATCCGAA GTGCCCGGAA ACCTGTGCGA AACCCAGGTC
CCGCCCCAGC GCAAGACCCC CACCGGCCAC CAGATCAAAT GCCACCTGAG CGAAGAGAGC
TTCGCCAGAA TGGGCCCGGT CATCAAGATG GCGGCGGAGT GA
|
|---|
| Protein sequence | MTETYDGPIL EIENLSISFF TRLREIPAVM DFSCTVMPGE AMGLVGESGC GKSTVALGVM
QDLGVNGRIV GGTIKFKGRD LNTMSPEELR RIRGKEIAMI YQEPMASLNP AMRIGKQLME
VPMIHEGVSE DVAYQRALDV VTDVRLPDPK RILNSFPHQL SGGQQQRIVI AMALMANPAL
LILDEPTTAL DVTVEAAVVD LVKDLGKKYG TSMLFISHNL GLILETCDRL CVMYSGEAVE
TGSIEDVFDE MQHPYTQALF RSIPLPGADK NARPLVAIPG NFPLPHERPK GCNFGPHCDY
FQPGLCDAQD IRMRKIPGDD RHGSRCLRFE EIDWNAPVEK ADQTEKPEPG RVVLNMDNLK
KYYEVAASAL FGGKNKKVVK ANEDLSFEAR EGETLAIVGE SGCGKSTFAK VLMGLETATD
GTILLDNREI QDIEIQDRDT KTVADVQMVF QNPFDTLNPS MTVGRQIIRA LEIFGVGDTE
DARKQRMLEL LDLVKLPRAF ANRMPRQLSG GQKQRVGIAR AFAGDARIVV ADEPVSALDV
SVQAAVTDLL MEIQRQNQTT LLFISHDLSI VRYLSDRVMV MYLGHVVELG TTDEVFSPPY
HPYTEALLSA VPIADTSIQK ERIVLDGDIP SAMNPPPGCP FQTRCRWKSE VPGNLCETQV
PPQRKTPTGH QIKCHLSEES FARMGPVIKM AAE
|
|---|
| |