| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1460 |
|---|
| Symbol | rplU |
|---|
| ID | 5712638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1517692 |
|---|
| End bp | 1518357 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267374 |
|---|
| Product | 50S ribosomal protein L21/unknown domain fusion protein |
|---|
| Protein accession | YP_001532803 |
|---|
| Protein GI | 159044009 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0261] Ribosomal protein L21 |
|---|
| TIGRFAM ID | [TIGR00061] ribosomal protein L21 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0369658 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAG ATCATATGTT TGCGGTCCTC AAGACCGGTG GCAAGCAGTA CAAGGTTTCC
AGCGGGGATA TCCTGCGCGT GGAAAAACTG GCCGCCGAAG CGGGTGAAAC CGTTCAGTTC
AACGAGATTC TCATGGTCGA CGGCACCGTC GGCGCCCCCC TGGTGGATGG GGCCGGTGTG
CAGGCCGAAG TGATCGAGCA GATCAAGGGC AAGAAGGTCA TCCATTTCGT CAAGCGTCGG
CGGAAGCATG GCTCCAAGCG CACCAAGGGC CATCGCCAGC AACTGACGCT GCTGCGCGTG
ACCGACATCC TGGCCTCCGG CGCAGGCGCG ACCGGCGTGA AAGCCGCCGT GGGCGCAGGC
TCGGTCTCCG GTGCCGCCGT CGAAGCGGCC GCACCTGCGC CGAAGAAAGC CGCGCCCAAG
AAGGCGGCCC CGAAAGCCGA CGCGCCCAAG GCCGAAGCGC CCGCAGGCGC GGACGACCTC
AAGAAGCTGT CGGGCGTGGG CCCGGCGCTC GAGAAGAAAC TGCTGGAGGC GGGCGTGACC
ACCTTCGCAC AAATCGCAGC ATGGACCGAC GAGGACGTGG CTGCTATGGA CGAGAAACTG
TCGTTCAAGG GCCGGATCGA GCGTGAAGGC TGGATCGCTC AGGCCAAAGA ACTGGCAAAC
GGCTGA
|
|---|
| Protein sequence | MKEDHMFAVL KTGGKQYKVS SGDILRVEKL AAEAGETVQF NEILMVDGTV GAPLVDGAGV
QAEVIEQIKG KKVIHFVKRR RKHGSKRTKG HRQQLTLLRV TDILASGAGA TGVKAAVGAG
SVSGAAVEAA APAPKKAAPK KAAPKADAPK AEAPAGADDL KKLSGVGPAL EKKLLEAGVT
TFAQIAAWTD EDVAAMDEKL SFKGRIEREG WIAQAKELAN G
|
|---|
| |