| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1443 |
|---|
| Symbol | |
|---|
| ID | 5712620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1499876 |
|---|
| End bp | 1500844 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267356 |
|---|
| Product | TRAP transporter solute receptor |
|---|
| Protein accession | YP_001532786 |
|---|
| Protein GI | 159043992 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.552427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACCT ATCTCACTGG GGCCCTTGTG GCCGCGGCGA CCGCGCTCGG CGGTGGCTCT
GTCGCAGCTC AGGACACTTT CATCGCGATT GGCACCGGCG GCGTGACCGG CGTGTACTAC
CCCACCGGTG GCGCGATTTG CCGCCTGGTG AACCGCAACC GCTCCGAGCA CGGCATCCGC
TGCGGTGTCG AATCCACCGG CGGGTCGGTG TTCAACATCA ACGCGATCCG GGGCGGCGAG
CTGGAATTCG GCGTGGCCCA GTCCGACTGG CAGTTCCACG CCTTCAACGG CACCTCCCGC
TTCGAGGAGC AGGGGCCGTT CGAGGATTTG CGCGCGATCT TCTCGGTTCA CCCCGAGCCC
TTCACCGTCG TGGCGCGGGC CGATGCGGGC ATCGAGACCT TCGAGGATCT CAAGGGCAAG
CGCGTCAATG TCGGCAACCC CGGCTCGGGT CAGCGCGGCA CCATGGAAGT GCTGATGGAG
GCCATGGGCT GGACCATGGA CGACTTCGCC GTCGCCTCCG AGCTTCAGGC GGCCGAGCAG
TCCCAGGCGC TTTGTGACAA CAACATCGAC GCGATGATCT ACACCGTGGG CCACCCCTCC
GGTTCCATCC AGGAGGCGAC CACCGCCTGC GACAGCGTGC TCGTGACCGT GGCCAACGAC
GCGGTCGACC AGCTCGTGGC CGATAACAGC TTCTATCGCA CCGCCACCAT CCCCGGCGGG
ATGTATCGCG GCACCGACGA GGACACCATG ACCTTCGGCG TCGGCGCGAC CTTCGTCAGC
TCCATGGCCG TGCCGGAAGA GGTGGTCTAC GAGGTGGTCA AGGCCGTGTT CGACAATATC
GACCAGTTCA AGGGCCTGCA CCCGGCCTTC GCCAATCTCG ACGCCAAGGA GATGGCCAAT
GACGGTCTGT CCGCGCCGCT GCATCCGGGT GCTGAGCGGT ATTTCCGCGA AGCCGGCCTG
ATCGAATAA
|
|---|
| Protein sequence | MRTYLTGALV AAATALGGGS VAAQDTFIAI GTGGVTGVYY PTGGAICRLV NRNRSEHGIR
CGVESTGGSV FNINAIRGGE LEFGVAQSDW QFHAFNGTSR FEEQGPFEDL RAIFSVHPEP
FTVVARADAG IETFEDLKGK RVNVGNPGSG QRGTMEVLME AMGWTMDDFA VASELQAAEQ
SQALCDNNID AMIYTVGHPS GSIQEATTAC DSVLVTVAND AVDQLVADNS FYRTATIPGG
MYRGTDEDTM TFGVGATFVS SMAVPEEVVY EVVKAVFDNI DQFKGLHPAF ANLDAKEMAN
DGLSAPLHPG AERYFREAGL IE
|
|---|
| |