| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1375 |
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| Symbol | |
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| ID | 5712551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1428663 |
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| End bp | 1429859 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267287 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001532718 |
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| Protein GI | 159043924 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.291612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGATGA CCATGAACGC TTACGTAACC GGGCTCGCCC GTTCCCGTCC CCTTGCACCC
ATCGAAACCG TGGAATCGCG TCTGCGCGGC TTCATCGACG GCCGGATCTT CGACCGTCCG
ACGCTGGTGC TCGACTGCGA TGCGGTGGTG GCGAAATACC ACGCGCTGGC GCATGGCCTG
GGGCAGGGGA CGCTGATCCA TTACGCGATG AAGGCCAACC CGGCGCCCGA GATCCTGCGC
GCGCTGGCGG CCGAGGGGTG CGGCTTCGAC GCGGCCTCCC GCGGCGAGAT CGAACTGGCC
CTGGCCGCCG GGGCCACCGC GGCGCGGATC TCCTTTGGCA ACACGATCAA GCGTCCTTCG
GACATCGCCT TCGCCCATGC CCACGGGATC GACCTCTTTG CGGCCGATGC CGAGGCCGAG
CTGGACAAGA TCGCCGCCCA TGCGCCGGGC GCGCGGGTCT TCCTGCGTGT GCTGGTGGGG
GCGACCGGGG CCGACTGGCC GCTGTCGCGC AAGTTCGGCT GCGCGCCCGA CACCGCCCTG
CGCCTGATGG ACCGCGCGGC GTTTCTCGGC CTGCGCCCGG TGGGCCTGAG CTTCCACGTG
GGCTCCCAGA CCCGCGATCC CGGCATGTGG TCCGACACGC TCGACCAGAT GGCCGAGATC
TGGCACGCGG GCCGCGCCCG GGGCCATGAC CTCAACCTGA TCAATATCGG CGGCGGCTTC
CCGGCATTCT ACGGCGATCC GATCCTGGAG GCCGAGACCT ATGCCGGGCG CGTCGGCGCG
CTGGTGCGGG CGCGGTTCGG CGATGCCACC GTGATGGCGG AGCCGGGCCG GGGTCTGGTG
GCCGAAGCGG GCATGATCGT GGCCGAAGTG CTGCTGGTGT CGCGCAAATC CGAGGACGAT
CTGTGTCGCT GGGTGTACCT GGATATCGGC AAGTTCTCGG GTCTGGCCGA AACCATGGAA
GAGGCGATCC GCTACCAGTT CGTCACCCCC CATGACGGCG GCGAAACCGG CCCCTGCATC
ATGGCCGGTC CCTCCTGCGA CAGCGCCGAT GTGCTCTACG AGCAGCGGCC CGTGCACCTG
CCCATGGCGC TGCAATCGGG CGACCGCATC CTGATCAAGG CCACCGGAGC CTACACCACC
ACCTATTCCA GCGTGGGCTT CAACGGCTTC CCGCCGCTCG ATCTGATCGT GATCTGA
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| Protein sequence | MEMTMNAYVT GLARSRPLAP IETVESRLRG FIDGRIFDRP TLVLDCDAVV AKYHALAHGL
GQGTLIHYAM KANPAPEILR ALAAEGCGFD AASRGEIELA LAAGATAARI SFGNTIKRPS
DIAFAHAHGI DLFAADAEAE LDKIAAHAPG ARVFLRVLVG ATGADWPLSR KFGCAPDTAL
RLMDRAAFLG LRPVGLSFHV GSQTRDPGMW SDTLDQMAEI WHAGRARGHD LNLINIGGGF
PAFYGDPILE AETYAGRVGA LVRARFGDAT VMAEPGRGLV AEAGMIVAEV LLVSRKSEDD
LCRWVYLDIG KFSGLAETME EAIRYQFVTP HDGGETGPCI MAGPSCDSAD VLYEQRPVHL
PMALQSGDRI LIKATGAYTT TYSSVGFNGF PPLDLIVI
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