Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1349 |
Symbol | |
ID | 5711915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1400718 |
End bp | 1402574 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641267261 |
Product | ABC transporter related |
Protein accession | YP_001532692 |
Protein GI | 159043898 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.238944 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACGCA TCGATGACAT CTCCTATTCG GTCGAGGGGC GCCCGCTGCT CGAACATGCC TCCGCGGTGA TCCCCAGTGG TCACAAGGTC GGCCTGGTGG GGCGCAACGG GACCGGCAAG ACCACGCTTT TCCGGCTGAT CCGGGGCGAG CTGACGCTCG ATACGGGCGA GATCACCCTG CCCCGCGGCG CGCGGATCGG CGGGGTCAGC CAGGAGGTGC CGGGCAACGA GGTGTCGCTG CTGAACACGG TGCTGGCCGC CGACACCGAA CGCGCGGGCC TGATGGCGGA GGCCGAGACC GCCACCGACC CGGGCCGGAT CGCCGAGATC CAGACGCGGC TCGCGGATAT CGACGCCTGG TCGGCCGAGG CGCGCGCGTC GTCCATCCTG CGCGGTCTGG GCTTCACCGA GCCCGAGACG CACCAGCCGT GCTCGGCCTT CTCGGGCGGC TGGCGGATGC GGGTGGCGCT GGCGGCGGTG CTGTTCTCGC AACCCGACCT GCTGCTGCTG GACGAGCCGA CCAACTATCT CGACCTCGAA GGGGCGCTCT GGCTGGAGGC GTATCTCGCC CGCTATCCGC ACACGGTGCT GATCGTCTCC CACGACCGGG GGCTGCTGAA CCGCGCCGTG GGCGGGATCC TGCATCTCGA GGACCGCAAG CTCACCTTCT ATACCGGCCC CTATGACCAG TTCGCCCGCC AGCGCGCCGA GAAACGCGCG CTGCAAGCCG CCGCGGCGCG CAAACAGGAC GCCAAGCGCG CCCATCTCGA GAGCTTCGTG AACCGGTTCA AGGCCAAGGC GTCGAAGGCC AAGCAGGCCC AGAGCCGGGT CAAGATGCTG GAAAAGATGG AGACGATCCG CGTCCCCGAG GATGCCGCGC GCACGGTCTT CACCTTCCCC ACCCCCGAGG AACTCAGCCC ACCCATCGTG GCGACCGAGG GGGCCTCGGT CGGCTACGAC GGGACGGCCG TTTTGCGCGG GCTGTCCCTG CGGATCGACC AGGACGACCG GATCGCGCTG CTGGGCCGCA ATGGCGAGGG CAAGTCGACC CTGTCCAAGC TGCTCGCCGG GCGGCTGGAG GCGATGGACG GCACGCTGAC CGCGTCGAAC AAGCTGCGCA TCGGGTTCTT CGCCCAGCAC CAGGTGGACG AGTTGCGGGT CGAGGAAACC CCGCTGCAGC ACCTGCTGCG CGTGCGTCCC GATGAAGGCC AGGCCAGGCT GCGCGCGCGG CTGGCGGGCT TCGGGCTGAT GGCCGCACAA GCCGAGACCG AGGTCGGACG CCTGTCGGGC GGGCAGAAGG CGCGGCTGTC ACTGCTGCTG GCGACGCTGG ACGCGCCGCA TCTGCTGATC CTGGACGAGC CGACGAACCA CCTGGATATC GAAAGCCGTG AGGCGCTGGT CGAGGCCCTG ACCGCCTATA CGGGGGCTGT GATCCTGGTG AGCCACGACA TGCACCTGCT GAGCCTGGTG GCCGACCGGC TGTGGCTGGT CAAGGACGGC CATGTGGCGC CTTACGAGGA TGATCTCGAG GCCTACCGCC AGATGCTGCT GACGCCCGAC AAGCCGCGCA AGCCCAAGGC CGCCCCCGAG ACCGCGCCCA AACGCCCCTC GCGCGATGCG ATCCTGGCCC TGCGCGCCGA GGCCCGCAAA TGCGAGGAAC GGGTGAAGAA GATCACCGAG ATGCAGGAAA AGCTGTCGAA AAAGCTCGCC GACCCCGCGC TTTACGAGGA CGCCAAGGCG GGTGAGCTGG AAACCTGGAA CCGCAAATAT GCCGAGGTGA TGGACGGGCT CGACCGGGCG GAGGCGATGT GGATGGCCGC GCTCGAGAAG CTGGAGAAGG CCGAAAAGGC CGCCTGA
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Protein sequence | MLRIDDISYS VEGRPLLEHA SAVIPSGHKV GLVGRNGTGK TTLFRLIRGE LTLDTGEITL PRGARIGGVS QEVPGNEVSL LNTVLAADTE RAGLMAEAET ATDPGRIAEI QTRLADIDAW SAEARASSIL RGLGFTEPET HQPCSAFSGG WRMRVALAAV LFSQPDLLLL DEPTNYLDLE GALWLEAYLA RYPHTVLIVS HDRGLLNRAV GGILHLEDRK LTFYTGPYDQ FARQRAEKRA LQAAAARKQD AKRAHLESFV NRFKAKASKA KQAQSRVKML EKMETIRVPE DAARTVFTFP TPEELSPPIV ATEGASVGYD GTAVLRGLSL RIDQDDRIAL LGRNGEGKST LSKLLAGRLE AMDGTLTASN KLRIGFFAQH QVDELRVEET PLQHLLRVRP DEGQARLRAR LAGFGLMAAQ AETEVGRLSG GQKARLSLLL ATLDAPHLLI LDEPTNHLDI ESREALVEAL TAYTGAVILV SHDMHLLSLV ADRLWLVKDG HVAPYEDDLE AYRQMLLTPD KPRKPKAAPE TAPKRPSRDA ILALRAEARK CEERVKKITE MQEKLSKKLA DPALYEDAKA GELETWNRKY AEVMDGLDRA EAMWMAALEK LEKAEKAA
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