| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1200 |
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| Symbol | |
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| ID | 5711968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1240915 |
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| End bp | 1241691 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267111 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001532543 |
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| Protein GI | 159043749 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.302256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.536903 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCCCA TCCGCGACCA CAACCCCTCC GAGCGCACGC CCTATGTGAC GCTGATGCTG
ATCGGCCTGA ATGTGCTGAT CTTTCTCGCC TACCTGCCGC TGATGGGCGA CCCGCGCGCG
CTTTCGCTGT TCTTCCAGAC CTGGGGCCTT GTCCCGCGGG AGCTGACCGC GGGCAGCGGG
ACGCTGGGCC TGTTCACGTC GATGTTCCTC CATGGCGGGT TCATGCACCT GGCGGGCAAC
ATGCTTTTTC TGTGGGTCTT CGGCGACAAC CTGGAGGACC GGCTGGGGCA CGGGCGTTTC
CTCGGCTTCT ACCTGCTCTG CGGGATCGGC GCGGCGCTGG CGCAGGTGCT CGCCGCCCCG
TTCAGCCCGG TGCCCATGGT GGGCGCGTCG GGGGCCATCG CCGGGGTGCT GGGCGGCTAC
CTGTTGCTCT ATCCCAAGGC GCGGGTGGAT GTGCTGATCA TCATCGTGAT CATCTTCCGG
GTGATCCCGA TCCCGGCGGG CCTCGTTCTG TCGGGCTGGT TCGCGCTGCA GGTGTTCAGC
GGGGCGTCCA CGCCGATGGA CGGGGGCGGT GTCGCCTACT GGGCCCATGC GGGCGGGTTC
GTTGCGGGGC TGATCCTGAT CCTGCCGGTC TGGTTGCGAC TGGGGGGCCC GCGCTTCTGG
GCGCGCACGG ATGGCCATCC GGACCACCCG GAGGCGCGCT ACGACGCCAT CGCCTCGCGC
ATCCCCAAGG TGCGGCGGCG CACCAGTCGC GTTCCCCGCG TGCGGCGGCG CAAGTAG
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| Protein sequence | MFPIRDHNPS ERTPYVTLML IGLNVLIFLA YLPLMGDPRA LSLFFQTWGL VPRELTAGSG
TLGLFTSMFL HGGFMHLAGN MLFLWVFGDN LEDRLGHGRF LGFYLLCGIG AALAQVLAAP
FSPVPMVGAS GAIAGVLGGY LLLYPKARVD VLIIIVIIFR VIPIPAGLVL SGWFALQVFS
GASTPMDGGG VAYWAHAGGF VAGLILILPV WLRLGGPRFW ARTDGHPDHP EARYDAIASR
IPKVRRRTSR VPRVRRRK
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