| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1186 |
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| Symbol | pdxA |
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| ID | 5711954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1221827 |
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| End bp | 1222810 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641267097 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_001532529 |
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| Protein GI | 159043735 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.288383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.503527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGGCG CCCCGATTGC GCTGAGCTGC GGCGAGCCTG CGGGCGTGGG CCCGGAGATC
GCGGCCAAGG CCTGGGCCGC GCTCGGGCAG AGCCTGCCGT TTTTCATGAT CGGCGACCCG
GCGCATCTGG CCGCCCATGC GCCGGAGACG CCTTGCGTGG TGATCTCCGA CCCCGCGGAG
GCGCCCGCGG CGGCGGCACG CGGCGTGCCG GTTCTGGCCC AGCCGTTTCG CGGCGCACTC
ACCCCGGGCA AGCCCAATCC CGACCATGCC CAGGGGGTGA TCGACGCGAT TGCGCGGGGG
GTCGATCTGG CCCGGTCCGG GGCGGCGGCG GCGCTGTGTA CCGCGCCCAT TCACAAGAAG
GCGTTGCAGG ACGGGGCGGG CTTCGGGTTT CCGGGGCATA CGGAATACCT CGCCCATCTC
GGCGGCGATG TGCCGGTAGT GATGATGCTG GCCTGTCCCG AGCTGCGGGT GGTGCCCGCG
ACGATCCATA TCGCCCTGCG CGACGTGGCC GCCGCATTGA CACCTGCCCT GCTGGAGGAG
GTGATCCGCG TCACCCGCGC CGGGTTGCAG CGGGATTTCG GCATCCCCGC GCCGCGGCTG
GCCATTGCCG GGCTGAACCC CCATGCGGGC GAAGGCGGGG CGATGGGCGA CGAGGAGCTG
ATCTGGATCG CGCCCCTGCT GGACAAGCTG CGCGCGGAAG GGTTCGAGCT GCGCGGGCCG
CTCTCGGCGG ATACGATGTT TCATGCGGGG GCGCGGGCGG GCTATGACGC GGCGGTTGCG
ATGTATCACG ACCAGGCGCT GATCCCGATC AAGACGGTGG ATTTCGCGGG CGGGGTTAAT
GTCACGCTGG GGCTGCCGTT CATCCGCACA TCGCCCGATC ATGGCACGGC GCTGGACATT
GCGGGACAGG ACCGTGCCGA CCCCACCAGC CTGATCGCGG CGCTGCGCAT GGCCAAGGAC
ATGGCCCGGC GGCGGGGCGG CTGA
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| Protein sequence | MTGAPIALSC GEPAGVGPEI AAKAWAALGQ SLPFFMIGDP AHLAAHAPET PCVVISDPAE
APAAAARGVP VLAQPFRGAL TPGKPNPDHA QGVIDAIARG VDLARSGAAA ALCTAPIHKK
ALQDGAGFGF PGHTEYLAHL GGDVPVVMML ACPELRVVPA TIHIALRDVA AALTPALLEE
VIRVTRAGLQ RDFGIPAPRL AIAGLNPHAG EGGAMGDEEL IWIAPLLDKL RAEGFELRGP
LSADTMFHAG ARAGYDAAVA MYHDQALIPI KTVDFAGGVN VTLGLPFIRT SPDHGTALDI
AGQDRADPTS LIAALRMAKD MARRRGG
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