| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1125 |
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| Symbol | |
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| ID | 5711093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1150478 |
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| End bp | 1151446 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641267036 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001532468 |
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| Protein GI | 159043674 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0517135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA GCATCGAACC CCTGATTTAT ATCGGAATTT TCGTCGGCGT GCTGTTCCTG
GTCGAGGGGA TATACCTGGT CGCCTTCGGG AAGTCGATCA GCCTGAACAG CAAGGTCAAC
CGGCGCCTCG ACATGCTCGA CAAAGGCGCC ACGCGGGACG CCGTGCTCGA CCAGCTTCGC
AAGGAGATGT CGCAGCACAA GACGACCTCG ATCCTGCCCC TTTACGCAAT GCTGGCCGAC
AAGGCCAAGA AGGGGAACAT CGCGTTTTCT CCCGCAGCGC TGATCATGAT CATGGTGCTA
TTGATGGGCG TGTCCTTTGT CGGTCTGACA CTCGGCACCC AGGCCTCCCT GGCGGTGCGT
GTCGTGGCGT CGGTCGCGAT CGGAATCGGC GCGGTCTACA TGTGGGTCAA CAAGAAGGCC
AAGCAGCGGC TCGCGATGAT CGAGGAACAG CTGCCGGACG CAGTGGAGCT GATGGTACGC
TCCCTGCGGG TCGGGCATCC GTTCTCATCG GCGATCAACA TCGTCGCAAA GGAGGTGGCC
GATCCGCTTG GCACGGAATT CGGCATGATT GCCGATGAGG CCGCCTATGG GCGCGATGTC
ACCGAAGCGT TGAAGGAACT GGCCGAGCGC ATGGACATGC AGGACCTGCG CTTCCTCGCG
GTTGCCGTGT CGATCCAGAG CCAGTCGGGA GGCAACCTGG CCGAAATCCT TGACGGGCTC
GCCAAGGTGA TCCGAGCGCG CTTCAAGCTT TTCCGCCGCG TCAAAGCCAT CACCGCGGAG
GCGAAGTGGT CTGGGATGTT CCTGTCTGGC TTTCCGTTTC TCGCCCTTGT GGGGATCAAC
CTGATGGAGC CGGATTACTA CGCGGACGTG AAGGACACCC CCGCCTTCAT CCCGGCCTGT
GTCGTGGTCG CGGTCTTTCT GACAATCAAC ATCATCTTCA TGAAGATGAT GGTGAACATC
AAGGTCTAG
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| Protein sequence | MTISIEPLIY IGIFVGVLFL VEGIYLVAFG KSISLNSKVN RRLDMLDKGA TRDAVLDQLR
KEMSQHKTTS ILPLYAMLAD KAKKGNIAFS PAALIMIMVL LMGVSFVGLT LGTQASLAVR
VVASVAIGIG AVYMWVNKKA KQRLAMIEEQ LPDAVELMVR SLRVGHPFSS AINIVAKEVA
DPLGTEFGMI ADEAAYGRDV TEALKELAER MDMQDLRFLA VAVSIQSQSG GNLAEILDGL
AKVIRARFKL FRRVKAITAE AKWSGMFLSG FPFLALVGIN LMEPDYYADV KDTPAFIPAC
VVVAVFLTIN IIFMKMMVNI KV
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