| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1017 |
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| Symbol | hemB2 |
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| ID | 5710533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1051254 |
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| End bp | 1053368 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266928 |
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| Product | TonB-dependent heme/hemoglobin receptor family protein |
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| Protein accession | YP_001532360 |
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| Protein GI | 159043566 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0112436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTGA CACGATTTCT GCTCTGCACG ACGGCGCCGC TTTGCCTGGC CGTTTCTGCC
GCCGCCCAGC AGGCGGCCCC GCCCCCCGAA GAGGACATCT TCGCCGGTCT CGTGCCGGTG
GTGACCCAGT CCGGGGGCAC GGCGCTCGAC CCCATCGTGG TCGGGTCGGG CACCGACAAC
GTGGCCAGCG ACACGCCGCA ATCGGTATCG GTGATCTCGG CCGAGCAGAT CGCGCGCGAG
CAGCCGACCA CGATCAACGA TCTGTTCACC TCGATCCCCG GTGTCACAGC GGTCGGTTCG
GAACGGGTGC TGGGCCAACG GGTGAACATC CGCGGCATCG GCAGCAGCGC CGAGGGCGAC
CAGAACCGGC TGATCACCCG GATCGACGGC GTGGTGAAAT TCTACGAACA GTATCGCATG
GGCGCGATCT TCACCGATCC CGACCTCTAC CGGCGGATCG AGGTGCTGCG GGGGCCTGCG
TCCTCGACGC TGACGGGGGC GGGGGCCGTG GGCGGCGTGA TCGAGTTGCA GACACGCGAA
GCGGCCGATT TCCTGTCCGG GCCCGAGGAC GATTTCGGCG GGCGCCAGAA GCTGAGTTTC
GGCACCAATG GCAACGAGGC GCTGAGCAGC ACGGTGCTGG CCTTCCGGCC GGCCGAGGGG
CTCGAATTCC TGACCGCGTT CACTTACCGC GAACGGGACA ATTACGAGGA TGGCGACGGC
GAGGAGGTGG TCGGCACCAA TTTCGATGCG ACCGCTGTGT TGCTCAAGGG GCGCTACAGT
TTCGGCGAGG GCATGGCCCA CAGCGTCTTT GCCACCTATC AGAACTGGGC CAGCGACGCC
AAACAGGCCG AGTATGCCCA GACCGAGACC TTCGAAGCCT TCGGGCGGGT GGACCGGGAC
GTGGACGACA GTCTTTTCGT GCTGGGCTAT GACTACAACC CGCCCGAAAA CGACCTGATC
GACCTGGAAG TGCGCCTGGG CTATTCCGAC ACGGAGGTGA TCCAGGAAAA CGCGACGAAC
CCGCTGGGCA TTCCCAGCTC GCTCTTCGAG GATGCGGAAT ACGGCTACGA ATCCTGGCAG
CTCAACGTGA TGAACACCTC TTTCCTGGCG CTGGGCGGGA CCGAAGTGAC GCTTGCCTAC
GGGTTCGACG CCAGCCGGCA GGAACGGGTC GGCGAGGCCA CCAGCCGGAA ATTCCCGACC
ACGCCGCCCA ATGGCTTCAT CGCCTTCCAG CCCGGCGGCG AGGACGAGAA CATCGCCGTC
TTTGCCCAGG CCGAGATCGT CACGCCCTTC GGGCTGACGA TCATTCCCGG CCTGCGCTAC
GAGTGGGAGA CGCTGACCCC GGCGGACAAC AACACCAGCT TCGGCGCGGG CGACAAGGTC
GAGAACGAGG CCTTCGCGCC AAAGATCGCC CTGCTTTACG AAGTGACCGA TGCGATCAAC
GTGTTCGGCA CCTATGCCCG GACCGAGCGC CTGCCAGTGC TGGACGAGGT CTATGACGGC
TCCAGCGGCA ATCTCGATCT GGTGCCCGAG AAGGCCGAGA CCTGGGAGGT CGGGCTGTCC
TACTCGGCGC TGGACGTGTT CCAGTCGGGC GATCAGCTGG TCGGCAAGCT GACCTATTTC
GACACGGATG TGGAGAACCT GATCGCGCGG GCCACCACGT CGGATCCGTT CGTCAATATC
GACGATGCGA CCTACAAGGG CTGGGAGCTG GAGGTGGCCT ACGATTCGGA CCTCTGGTTC
GGCTCGCTGG CCTATGCGCG GGTGCGCGCG GACGGGACCG ATGATGGCGG CCCCCGCGAG
CCGCTGGAGG GCATTCCCGC CGACGAGGTG TCGGTCACCC TGGGCACGCG GCTCGATCGT
TACGACCTGG AGCTCGGCGT TACCGGCACC TACACCTGGG AGCAGGACCG GGTGCCCACG
GGCGACGAGA CCACCGACAG CTACCAGGTG GTGGATCTCT TCGCGACCTG GGTGCCGCCC
GTCGATCTGG CCCAGGGCGT GGAGGTGCGG CTGGCTGCGA ACAACATCTT CGACGAGGCC
TACAAGCCCG CCCTCTACCT GACCGACAAT GCCCGGGGGC GGAACATCTC GGTCAGCCTC
GCCCTGGCGT TCTAG
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| Protein sequence | MDVTRFLLCT TAPLCLAVSA AAQQAAPPPE EDIFAGLVPV VTQSGGTALD PIVVGSGTDN
VASDTPQSVS VISAEQIARE QPTTINDLFT SIPGVTAVGS ERVLGQRVNI RGIGSSAEGD
QNRLITRIDG VVKFYEQYRM GAIFTDPDLY RRIEVLRGPA SSTLTGAGAV GGVIELQTRE
AADFLSGPED DFGGRQKLSF GTNGNEALSS TVLAFRPAEG LEFLTAFTYR ERDNYEDGDG
EEVVGTNFDA TAVLLKGRYS FGEGMAHSVF ATYQNWASDA KQAEYAQTET FEAFGRVDRD
VDDSLFVLGY DYNPPENDLI DLEVRLGYSD TEVIQENATN PLGIPSSLFE DAEYGYESWQ
LNVMNTSFLA LGGTEVTLAY GFDASRQERV GEATSRKFPT TPPNGFIAFQ PGGEDENIAV
FAQAEIVTPF GLTIIPGLRY EWETLTPADN NTSFGAGDKV ENEAFAPKIA LLYEVTDAIN
VFGTYARTER LPVLDEVYDG SSGNLDLVPE KAETWEVGLS YSALDVFQSG DQLVGKLTYF
DTDVENLIAR ATTSDPFVNI DDATYKGWEL EVAYDSDLWF GSLAYARVRA DGTDDGGPRE
PLEGIPADEV SVTLGTRLDR YDLELGVTGT YTWEQDRVPT GDETTDSYQV VDLFATWVPP
VDLAQGVEVR LAANNIFDEA YKPALYLTDN ARGRNISVSL ALAF
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