| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0958 |
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| Symbol | |
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| ID | 5710649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 982492 |
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| End bp | 983472 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266869 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532304 |
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| Protein GI | 159043510 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.674704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTT CCCGTCTTGC CCTGATCGCT GCGGCCAGCG CGATGCTCAT GCCGGCGGCC
GCCGCCGCCG AAGCCGTCAT GCAGATCAAC TCTTCCCTGC CCGAAGGCTC CTTCGCCCAT
GTCTTCCTGC AAGAGTACGA GCAGCGCCTG GAGGCCGCCG CCCCGGGCGA GATCGACGTG
CAGATCTTCA TGTCCAATAC TTTGGGCAAG GAAGAAGACG TCCTGCAGGG CCTCGGTTTC
GGCACGCACC AGGCCTCGCT TTCCGCCTCC GCCGTGGCAC AGGTGAACAA CCGCACCTCG
ATCTTCGATC TGCCCTACCT GTTCGAGGAC CGCGCCGCCG TACAGACCTT CATCGACAGC
CCGGCGGGCG AAATGCTGGC CGACGGCTTC GACGTCACAG GCATGGTGCT GGCGGCCATG
TGGGACAACG GGTTCCGACA GATCACCAAC AATGTGCGCC CCATCGTGAC CCCCGCTGAC
CTCGACGGTC TGAAAATCCG CACCCCCACC AACCGCCAGC GGGTAGAGAT GTTCAACACC
CTCGGCGCCA ACGCCACGCC GCTTTCGTTC GGGGAGGTCT ACTCCGCCCT CGACCAGGGC
ACCATCGACG GCCAGGAAAA CCCCGCCAAC GTGGTCGAGA CTGCAAAGCT CTTCGAGGTG
CAGGGCTACA TGTCCCTGAC CAACCACGTC TATCTGCCCA CCTTTTTCGT GATCGGCGAG
CCGTTCCTGA ACTCGCTCAC GCCAGAGTTG CGCGAGACCG TGATCTCGGT CGCCAAGGAG
GTCGGTCCGT GGAGCTTCGA GTGGGGCGAA AAAAGCGATA CAGAGACCAT CGCGGCCTTG
CAGGAGAAGC TGGAGGTCAA CGAGATCGAC TTCGCGGCGT TCCAGTCTGC CGCAGCGCCG
CTCTATGACA GCCCGACCTT CGTGGACGTG ATCGGCGCCG ATATGATCGC GGCGACGAAA
ACCGCCCTCG GCATCGAATA A
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| Protein sequence | MTTSRLALIA AASAMLMPAA AAAEAVMQIN SSLPEGSFAH VFLQEYEQRL EAAAPGEIDV
QIFMSNTLGK EEDVLQGLGF GTHQASLSAS AVAQVNNRTS IFDLPYLFED RAAVQTFIDS
PAGEMLADGF DVTGMVLAAM WDNGFRQITN NVRPIVTPAD LDGLKIRTPT NRQRVEMFNT
LGANATPLSF GEVYSALDQG TIDGQENPAN VVETAKLFEV QGYMSLTNHV YLPTFFVIGE
PFLNSLTPEL RETVISVAKE VGPWSFEWGE KSDTETIAAL QEKLEVNEID FAAFQSAAAP
LYDSPTFVDV IGADMIAATK TALGIE
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