Gene Dshi_0887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0887 
SymbolsgaA2 
ID5710577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp902124 
End bp903314 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content65% 
IMG OID641266797 
Productserine--glyoxylate transaminase 
Protein accessionYP_001532233 
Protein GI159043439 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.894708 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATC AGAACCCGAT TTTCATCCCC GGCCCGACCA ACGTTCCCGA CCGCCTGCGG 
CGCGTGATGG ACATGCAGAC GCGGGACCAT CGCTCCCCGG CGTTCGGCGC GATGCTGCCC
GAACTGTTCG ACGGCGTGCG CAAGGTCTTC AACACCAAGG ACGCCGCGAT CATCACCTTC
CCGGCCAGCG GCACGGGCGG CTGGGAAGCC GCCGTCAGCA ACACCCTGTC GCCCGGCGAC
ACGGTTCTGA TCGCCCGCTA CGGCATGTTC AGCCACCGCT GGATCGACCT GTGCCAGCGC
CATGGCCTGA ATGTCGAGAT CATCGAATGC GCCTGGGGCA GCGGCGCGCC CGCCGACCTG
TTCGCCGAGC GGCTGAAGGC CGACAAGGGT CACGAGATCA AGGCCGTCCT CGTCACCCAT
AACGAAACCG CGACCGGCGT GCGGTCCGAC ATCGGGGCGG TGCGGCGCGG CATGGACAGT
GCCGATCACC CGGCGATGCT GATGGTGGAC TGCGTGTCCT CGCTGGCCTC GATGCCCTTC
GATTTCGACG GCTGGGGCGT GGATGTCGCG ATCACCGGCT CTCAGAAGGG ATTCATGCTG
TTCACCGGGA TGTGCATCGT CGCCGTCAGC CAGAAGGCGC TGGAGCATCG CAAGACCGCG
AAACTGCCGC GCACCTTCTT CAGCTTCGAC GACATGCTGG CGGCCAATGG CGCGGGCGGC
TATCCCTACA CCCCGCCGAT CCAGTTGATG TTCGGGCTGC AGGAAAGCCT CAAGATGCTG
TTCGAAGAGG GGCTGGAAAA TGTCTATGCG CGCCACTTCC GGCTGGCCGA GGGCGTGCGC
CGCGCGGTCG ATGCCTGGGG CCTGCGCCTG TGTGCCGAGA GCGCGGATCT TTACTCCGAC
ACGGTCAGCG CCATCTATGT GCCCAAGGGG TTCGACAGCA ACGCGCTGAC CCAGCATGCC
TATGATGCCT ATGACATCTC CTTCGGCGTG GGCCTGGGGG AGATGAACGG GAGGGCCTTC
CGCATCGGGC ATCTGGGCGC GTTGACGGAT GTGACCATGC TGTCGGGTCT TGCGACCATC
GAGATGGCCA TGGCCGATCT CGACTACCCC ATCGAGCTGG GCTCCGGCGT GGCCGCGGCG
CAGCAATTCT ACCGGACAAC GGCGGGCGCA AGCCTCGCCA AAGCAGCGTG A
 
Protein sequence
MFDQNPIFIP GPTNVPDRLR RVMDMQTRDH RSPAFGAMLP ELFDGVRKVF NTKDAAIITF 
PASGTGGWEA AVSNTLSPGD TVLIARYGMF SHRWIDLCQR HGLNVEIIEC AWGSGAPADL
FAERLKADKG HEIKAVLVTH NETATGVRSD IGAVRRGMDS ADHPAMLMVD CVSSLASMPF
DFDGWGVDVA ITGSQKGFML FTGMCIVAVS QKALEHRKTA KLPRTFFSFD DMLAANGAGG
YPYTPPIQLM FGLQESLKML FEEGLENVYA RHFRLAEGVR RAVDAWGLRL CAESADLYSD
TVSAIYVPKG FDSNALTQHA YDAYDISFGV GLGEMNGRAF RIGHLGALTD VTMLSGLATI
EMAMADLDYP IELGSGVAAA QQFYRTTAGA SLAKAA