| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0872 |
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| Symbol | |
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| ID | 5710562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 888387 |
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| End bp | 889970 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266782 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001532218 |
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| Protein GI | 159043424 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.625735 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAA CCACCCTCCT GCTGGCCACA TCGGCGCTCG TTCTGACGCC GATCCTCGCC
AGCGCCGAAA CCCTGCGCTG GGCGCGGGCG GGCGACAGCC TGACCCTCGA TCCCCATGCC
CAGAACGAAG GGCCCACCCA TACGCTCGCC CACCAGATCT ACGAGCCGCT GATCATCCGC
GATCATTTCG GCCAGTTCCA GGGTGCACTG GCCACCGAAT GGGCCCCCAA GCCCGATGAT
CCCAGTGTCT GGGTCTTCAA GCTGCGCGAG GGCGTGACCT TCCATGACGG CTCGGCCTTC
ACCGCCGAGG ACGTGGTGTT CTCCTTCGAG CGGGCGAAAT CCGAAACCTC CGCCATGAAA
GAGCTGCTGA CCTCGATCTC CGAGGTGCGC GCGGTCGACG ACATGACGGT GGAGTTCGTG
ACCGAAGGAC CGAACCCGAT CCTGCCCAAC AACTTCACCA ACCTGTTCAT CATGGACAAG
GGCTGGACCG AGGCCAATGG CGTCACCCGG GTGCAGGACA TCGCCAATGG CGAGACCACC
TTCGCCGCGA CCAACGCCAT GGGCACCGGC CCCTACGTGC TCACCAGCCG CGAGCCGGAT
GTGCGCACCG TGCTGACGAT CAACCCAGAC TACTGGGGCG CGGATGACTT CCCGCTGCAG
GTCACCGAGA TCATCTATAC CCCGATCCAG AACGCCGCGA CACGGGTGGC GGCCCTTCTG
TCGGGCGAGG TGGACTTCAT CCAGGACGTG CCCGTGCAGG ATCTCGAACG CGTGGCCGGG
ACCGACGGGC TGGAGGTGCA GACCGCCGCC CAGAACCGGG TGATCTTCCT CGGCATGAAC
TCCGGGGCCG ACGATCTCGA CAGCGACAAT GTCGAAGGCG CCAACCCGCT GGCCGATGCG
CGCGTGCGCA AGGCAATGAA CATGGCGATC AACCGCGACG CCATCAAACA GGTGGTGATG
CGTGGCCAGT CCGCGCCTGC CGGCATGATC GCGCCGCCCT TCGTCAACGG CTGGACCGCC
GAGATGGACG GGGCCGCCAT GACCGATATC GACGCCGCCA AGGCGCTGAT GGAGGAAGCA
GGCTATGGCG ACGGCTTCTC GATCCAGCTC GACTGCCCCA ATGACCGCTA CATCAACGAC
GAGGCGATCT GCCAGGCGGT CGTGGGGATG CTCGGCCAGA TCGGCGTGAC CGTGAACCTC
GACGCCAAGC CCAAGGCACA GCACTTCCCG CTGATCCAGA ACGGCGAGAC CAACTTCTAC
ATGCTGGGCT GGGGTGTTCC GACCTATGAC AGCGAGTATG TCTTCAACTT CCTGGTGCAC
ACCCGCGAGG GTGACCGGGG CTCCTGGAAC AACACCGGCT TCTCGAACGC CGAGGTGGAC
GCCAAGATCG TCAGCCTGGC CTCCGAGACC GATCTGGCGG TCCGCAACCA GACCATCGCC
GAGATCTGGC AGGTGGTGCA GGACGAACAA CTCTACCTGC CGATCCACCA CCAAGTGCTG
AACTGGGGCA ACACCTCCGC CGTCGGCTAC CCCAACGTCT CGCCGGAGGA CGACCCGAAG
TTCAAGTTCT TCGAGATGAA CTGA
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| Protein sequence | MQKTTLLLAT SALVLTPILA SAETLRWARA GDSLTLDPHA QNEGPTHTLA HQIYEPLIIR
DHFGQFQGAL ATEWAPKPDD PSVWVFKLRE GVTFHDGSAF TAEDVVFSFE RAKSETSAMK
ELLTSISEVR AVDDMTVEFV TEGPNPILPN NFTNLFIMDK GWTEANGVTR VQDIANGETT
FAATNAMGTG PYVLTSREPD VRTVLTINPD YWGADDFPLQ VTEIIYTPIQ NAATRVAALL
SGEVDFIQDV PVQDLERVAG TDGLEVQTAA QNRVIFLGMN SGADDLDSDN VEGANPLADA
RVRKAMNMAI NRDAIKQVVM RGQSAPAGMI APPFVNGWTA EMDGAAMTDI DAAKALMEEA
GYGDGFSIQL DCPNDRYIND EAICQAVVGM LGQIGVTVNL DAKPKAQHFP LIQNGETNFY
MLGWGVPTYD SEYVFNFLVH TREGDRGSWN NTGFSNAEVD AKIVSLASET DLAVRNQTIA
EIWQVVQDEQ LYLPIHHQVL NWGNTSAVGY PNVSPEDDPK FKFFEMN
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