| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0862 |
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| Symbol | |
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| ID | 5710552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 877656 |
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| End bp | 878795 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266772 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001532208 |
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| Protein GI | 159043414 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.284446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.223955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTGA AAACCACCCT GATGGCGGCC CTGCTGGCCG CGACGACCGC GGGCGCGGGC
TGGGCCGACC CGGTCAAGGT CGGGATGATC ACGACGCTGT CGGGCGGGGG CGCGGGGCTG
GGCATCGATG TGCGAGACGG CTTCATGCTG GCGGTCAAGC AGGCGGGCAA CCCGGACCTG
GAGGTGGTGA TCGAGGACGA CCAGCGCAAG CCGGACATCG CGGTGCAGCT GGCCGACAAG
ATGATCCAGT CCGAGAAGGT CGATGTGTTG ACAGGCATCA TCTTTTCCAA CCTCGCCATG
GCGGTGATCC CGGCGGCGAC CGCGCAGGGC AAGTTCTACC TGTCGCCCAA TGCGGGGCCT
TCGGCGCTGG CCGGGCGCGG GTGCCACCCG AACTATTTCA ACGTGGCCTG GCAGAACGAC
AACCTGCATG AGGCCGCGGG CGCTTATGCC AACGAGGCCG GGTTCAAGAA CACCTATATC
CTCGCGCCAA ACTACCCAGC GGGGCAGGAT GCGCTGACCG GGTACAAGCG GTTCTATGAA
GGCGCGCTGG CGGGAGAGTT CTACACCAAG CTGGGCCAGA CCGATTATGC CGCCGAGATC
GCACAGATCC GGGCGTCGGG GGCGGACTCG GTGTTCTTCT TCCTGCCCGG GGGCATGGGG
ATTTCCTTCC TCAAGCAATA CGCAGCTTCC GGTGTGGACC TGCCGGTGGT GGGCCCGGCC
TTCAGCTTCG ACCAGGGGAT CCTGCAGGCG GTGGGCGAGG CCGCGCTGGG GGTGAAGAAC
ACCAGCCAGT GGAACAAGGA TCTCGACAAC CCGGCGAACG TGGCCTTTGT CGAGAGCTTC
CAGGCGGAGT ACGGGCGGCT GCCCTCGCTC TATGCCAGCC AGGGGTTCGA CACTGCCAAC
CTGCTGCTGA GTGCGATGGC CAAGGCGGAC GTGTCGGACA CCGAGGCCTT TCGCGCGGCG
CTGAAGGAGG CCGATTTCGC CTCCACCCGC GGGGATTTCC GGTTCGGGCC GAACAACCAT
CCGATCCAGG ACATCTACGT GCGCGAGGTG ATCCAGGAGG GGGACGTGTT CACCAACAAG
ACCCTGGGCG TGGCGCTGGA GGACCGCGGC GACGCCTATG CGGACGAGTG CCGGATGTAG
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| Protein sequence | MKLKTTLMAA LLAATTAGAG WADPVKVGMI TTLSGGGAGL GIDVRDGFML AVKQAGNPDL
EVVIEDDQRK PDIAVQLADK MIQSEKVDVL TGIIFSNLAM AVIPAATAQG KFYLSPNAGP
SALAGRGCHP NYFNVAWQND NLHEAAGAYA NEAGFKNTYI LAPNYPAGQD ALTGYKRFYE
GALAGEFYTK LGQTDYAAEI AQIRASGADS VFFFLPGGMG ISFLKQYAAS GVDLPVVGPA
FSFDQGILQA VGEAALGVKN TSQWNKDLDN PANVAFVESF QAEYGRLPSL YASQGFDTAN
LLLSAMAKAD VSDTEAFRAA LKEADFASTR GDFRFGPNNH PIQDIYVREV IQEGDVFTNK
TLGVALEDRG DAYADECRM
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