| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0845 |
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| Symbol | |
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| ID | 5711471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 854790 |
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| End bp | 856109 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641266754 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001532191 |
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| Protein GI | 159043397 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.457545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.657757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTGACA CCGCGGCGCG GGCGCCCATC ACCCATCGCC GGGTGCTGCA TATCGCGGTG
CCCATCGTGC TGTCGAATGC CACCGTGCCG ATCCTGGGCG CGGTGGACAC GGGCGTCGTG
GGCCAGATGG GCGAGGCTGC GCCCATCGGT GCGGTGGGCA TCGGCGCGAT CATCCTGACG
GCGATCTACT GGATCTTCGG TTTCTTGCGG ATGGGCACCA GCGGGCTGGT GGCGCAAGCG
CTGGGGGCAG AGGACCGCGA CGAGGTTTCG GCCCTGCTGA CCCGTGCGCT GATGATCGGG
TTCGGGGCCG GGCTGGCGCT GATCGCGCTG CAATCGGCGC TGTTCTGGGG CGCCTTCCAG
TTGTCGCCCG CCAGTGCGGA GGTCGAGACG CTGGCGCGGG AGTACATGGC GATCCGGATC
TGGTCGGCGC CTGCGGCCAT CGCGATCTAC GGGCTGACCG GCTGGCTGAT CGCGGCGGAG
CGGACGCGCG GGGTGCTGGT GCTGCAACTG TGGATGAACG GGCTGAATAT CGGGCTCGAT
CTGTGGTTCG TGCTGGGGCT CGGCTGGGGT GTGCCGGGGG TGGCCTTCGC CACCTTCCTC
GCGGAATGGA CGGCGCTTGG CTTGGGTCTG TGGCTCTGCC GGGATGCGTT CGGGCGGCCT
GCATGGCGGG ATCGGGCGCT GGTGTTCGCG CGGGCGCGGC TGCTGCGGAT GGCATCGGTG
AACAGCGACA TCCTGATCCG GTCGGTGCTG CTGCAGGCGG CCTTCGTCTC GTTCCTGTTT
CTGGGCGCGG ATCTGGGCGA TGTGACCCTG GCGGCCAACC AGGTGCTTTT GCAGTTTCTG
CATGTCACCG CCTATGCGCT CGATGGGTTC GCCTTTGCCG CCGAGGCGCT GGTGGGCCAG
GCGTTCGGCG CGGGCGCGGT GGACCGGCTG CGGCGCGGCG CGCTGCTGAC GAGCGTCTGG
GGCGGGATCA CCTGCGTCGC ACTGGCGCTG GGCTTCGCGC TGGCGGGGCC CTGGGTGATC
GACCTGATGA CCACGGCCGA GGAGGTGCGG GCGGTGGCGC GCAGCTACTT GCCATGGATG
GTGGCCGCGC CGCTGTTGGG CGTCGCGGCC TGGATGCTGG ACGGGATTTT CATCGGGGCG
ACGCGCACGA AGGACATGCG CAACATGATG GTGCTGTCCT TCGCGGCCTA TGCGGCGGCG
GTGGCGGTGC TGCTGCCGCT CTTCGGCAAT CACGGGCTCT GGGCGGCGCT GATGGTGATG
TTCGTGGTGC GCGCCGTGAC GCTGGCGCTC CGCTATCCGG CTCTGGAGCG CGCGCTGTAG
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| Protein sequence | MADTAARAPI THRRVLHIAV PIVLSNATVP ILGAVDTGVV GQMGEAAPIG AVGIGAIILT
AIYWIFGFLR MGTSGLVAQA LGAEDRDEVS ALLTRALMIG FGAGLALIAL QSALFWGAFQ
LSPASAEVET LAREYMAIRI WSAPAAIAIY GLTGWLIAAE RTRGVLVLQL WMNGLNIGLD
LWFVLGLGWG VPGVAFATFL AEWTALGLGL WLCRDAFGRP AWRDRALVFA RARLLRMASV
NSDILIRSVL LQAAFVSFLF LGADLGDVTL AANQVLLQFL HVTAYALDGF AFAAEALVGQ
AFGAGAVDRL RRGALLTSVW GGITCVALAL GFALAGPWVI DLMTTAEEVR AVARSYLPWM
VAAPLLGVAA WMLDGIFIGA TRTKDMRNMM VLSFAAYAAA VAVLLPLFGN HGLWAALMVM
FVVRAVTLAL RYPALERAL
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