| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0833 |
|---|
| Symbol | |
|---|
| ID | 5711459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 841358 |
|---|
| End bp | 842983 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266742 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001532179 |
|---|
| Protein GI | 159043385 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0919846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTGGC TGGCAAATGA AACCGGGCTC GACAAATGCG CCGCGAATTA TGTGCCGCTG
ACACCGCTGA GCCATCTGGC CCGCGCCGCC TTGGTCTATC CCGACCGCGA GGCCGTGGTC
TATGGCGCGC GCCGCTTCAC CTACGCCGAA TACCACGCCC GCGTCAGCCG CCTGGCCTCG
GCGCTGGCGG GCGCGGGGAT CGCCCCGGGC GACGTGGTGG CGACGCTCCT GCCCAATATC
CCCGCCATGG TCGAGGCGCA TTTCGGCGTG CCTGCCTGCG GGGCCGTGCT CAACACCATC
AACATCCGGC TGGACGTGGA CACGGTCGCC TATATCCTCT CCCACGGTGG CGCCAAGGCG
GTGCTGGTGG ACAGCCAGTT CCTGCCGCTC GCCGCCGAGG CCTGCGAACG GCTCGACGGG
CCCGCGCCGC TCCTGATCGA GGTGGCCGAC GACGCCGCAG GGGTCCATGC CCTGGGCGGC
TACACGGAAT ACGAGGATTT CCTCGCGGGC GGCGACCCGG ACTTCCCCTG GATCATGCCC
CGGGACGAAT GGGAAAGCCT GGCACTCAAC TACACCTCCG GCACCACCGG GCGGCCCAAG
GGCGTGGTCT ACCACCACCG CGGCGCGTAT CTTATGACCA TGGGCACGGT GATCTCCTGG
CGCATGGTGC TCTACCCCCG CTGGCTCGCC ATCGTGCCGC TCTTTCACTG CAACGGCTGG
AACCACAGCT GGATGATGCC CATGCTCGGC GGCACGGTGG TGTGCTGCCG CGATGTGTCG
GCGCAGGCGA TCTACACCGC AATCGCCGAG AACGGTGTCA CCCATTTCGG CGGCGCGCCC
ATCGTGCTCA ACATGATCGT CAACGCGCCC GACGCCGCCC GCCGCCCCTT TTCGCACACG
GTGGAGGTCT TCACCGCCGG CGCGCCGCCC GCCGCCGCCA CCCTCGCCGC GATCGAGGAG
CTGGGCTTCA ACGTCACGCA AGTCTACGGG CTGACCGAAA CCTACGGGCA CGTGACCGAA
TGCGTCTGGA ATCCCGATTG GGACACCCTG CCCCAGGCCG AGCGCGCCGC GATCAAGGCC
CGCCAGGGCG TGGCCCTGCC CCAGATGGAG CATATCACCG TGATGGACCC CGAGATGCGC
CAGGTGCCCA TGGACGGGGC CACCACGGGC GAGGTGATGA TGCGCGGCAA CTCGGTGATG
AAGGGCTATT ACCGCAACCC CGACGCCACC GCCGAAGCCT TCGCAGGCGG CTATTTCCAC
TCCGGCGACA TCGCCCTGCA ACATCCCGAC GGCTACATCC AGATCGCCGA CCGGGCCAAG
GACATCATCA TTTCCGGCGG CGAGAACATC TCCTCGGTCG AGGTGGAGGG CGCGCTGATG
CACCACCCGG CGGTGCTGCT CTGCGCGGTG GTGGCCAAGC CGGACCCGAC CTGGGGCGAG
GTGCCCTGCG CCTTCGTCGA GCTGAAGGAC GGCAAGACCG CCGAGGAGGC CGAGATCATC
GCCTTCGCCC GCGAGCGGCT GGCAGGCTTC AAGACCCCCA AGAAAGTCGT CTTCACCGAA
CTACCCAAGA CTTCCACCGG CAAGATCCAG AAGTTCGAGC TGCGCAACCG CGCCAAGGCC
CTGTAA
|
|---|
| Protein sequence | MGWLANETGL DKCAANYVPL TPLSHLARAA LVYPDREAVV YGARRFTYAE YHARVSRLAS
ALAGAGIAPG DVVATLLPNI PAMVEAHFGV PACGAVLNTI NIRLDVDTVA YILSHGGAKA
VLVDSQFLPL AAEACERLDG PAPLLIEVAD DAAGVHALGG YTEYEDFLAG GDPDFPWIMP
RDEWESLALN YTSGTTGRPK GVVYHHRGAY LMTMGTVISW RMVLYPRWLA IVPLFHCNGW
NHSWMMPMLG GTVVCCRDVS AQAIYTAIAE NGVTHFGGAP IVLNMIVNAP DAARRPFSHT
VEVFTAGAPP AAATLAAIEE LGFNVTQVYG LTETYGHVTE CVWNPDWDTL PQAERAAIKA
RQGVALPQME HITVMDPEMR QVPMDGATTG EVMMRGNSVM KGYYRNPDAT AEAFAGGYFH
SGDIALQHPD GYIQIADRAK DIIISGGENI SSVEVEGALM HHPAVLLCAV VAKPDPTWGE
VPCAFVELKD GKTAEEAEII AFARERLAGF KTPKKVVFTE LPKTSTGKIQ KFELRNRAKA
L
|
|---|
| |