Gene Dshi_0780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0780 
Symbol 
ID5711216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp785693 
End bp786637 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content69% 
IMG OID641266689 
Productalpha/beta hydrolase fold protein 
Protein accessionYP_001532126 
Protein GI159043332 
COG category[I] Lipid transport and metabolism 
COG ID[COG2267] Lysophospholipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0399291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0368265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACGGACC CTGCCCCCTA TCGCGCGGAC CTCGCACGGG CCCCGCAGGA CGCGCGCGCC 
GTCTGGGTGC GCGCCGATGA CGGCGTGCGC TTGCGGGTGG CGCTCCATGC CACGGGCGAC
AAGGGCACGG TCCTGATCTT CCCCGGTCGC ACCGAGTGGG TCGAGAAATA CGGGCGGGTC
GCCGGGGATC TGGCGTCCGC GGGCTACAGC GCGCTGGTTA TCGACTGGCG CGGACAGGGT
CTGTCGGACC GCCTGCTGGA TGATCCGCTC AAGGGCCATG TGGCCGATTT TCCGGACTAC
CAGATGGATG TGCAGGCCGC GCTGGATTGC GCCCGGGATG CAGGGTTGCC GGAGCCCTAT
TTCCTGATCG CGCATTCCAT GGGCGGCGCC ATCGGCCTGC GTGCGGTGAT GCAGGACCTG
CCGGTGCGCG GCGCGGTGTT CTCCGGGCCG CTCTGGGGGG TGAAATTCCC GCTCTGGGCG
CGGCCCGTGG CGGGGCTTCT GGGCACGCTG TCTTCGTGGT TCGGGCTCGG CGAGGGATAC
GCGCCCAGCA CCAGCCCGGA GCCCTATATC CTGACCGCCC CCTTTCACGA CAACCTGCTG
ACCACCGACC GGGCCGAGTA TCAGGACATG GCCGACCAGA TGCGGGCCGA GCCGGGCTTT
GCCCTGGCCG GGCCGACGAT GATCTGGGTG CACGAGGCCA ATTGCGAATG CAAATGGCTC
GCGACGCAGC CCTCCCCCGC CCTGCCCTGC CTGACCTTGC TGGGCACGAA CGAGCGGATC
GTGGATGTGG GCGTGATCCA CGAGCGCATG GCGCGCTGGC CCGGCGGCGA GCTGGTCTTG
GTCGAGGGCG GCGAACACGA GGTGCTGATG GAATCACCCG ACAAGCGCGA CCCGCTGATC
GCGCGGATGA TCGCGTTCTT CGACGCGCAT CGCGGCACCG CGTAG
 
Protein sequence
MTDPAPYRAD LARAPQDARA VWVRADDGVR LRVALHATGD KGTVLIFPGR TEWVEKYGRV 
AGDLASAGYS ALVIDWRGQG LSDRLLDDPL KGHVADFPDY QMDVQAALDC ARDAGLPEPY
FLIAHSMGGA IGLRAVMQDL PVRGAVFSGP LWGVKFPLWA RPVAGLLGTL SSWFGLGEGY
APSTSPEPYI LTAPFHDNLL TTDRAEYQDM ADQMRAEPGF ALAGPTMIWV HEANCECKWL
ATQPSPALPC LTLLGTNERI VDVGVIHERM ARWPGGELVL VEGGEHEVLM ESPDKRDPLI
ARMIAFFDAH RGTA