| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0650 |
|---|
| Symbol | dnaX |
|---|
| ID | 5711485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 651643 |
|---|
| End bp | 653406 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641266558 |
|---|
| Product | DNA polymerase III subunits gamma and tau |
|---|
| Protein accession | YP_001531997 |
|---|
| Protein GI | 159043203 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | [TIGR02397] DNA polymerase III, subunit gamma and tau |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0107119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA CCACCACCAC CGGTTACCAG GTGCTGGCGC GGAAATACCG CCCGGCGACC
TTTGCGGACC TGATCGGCCA GGACGCCATG GTCCGCACCC TGCGCAACGC GTTTCAAGCC
GACCGGATCG CCCAGGCCTT CATGATGACC GGCATCCGCG GCACCGGGAA GACCACCACC
GCCCGGATCA TCGCCAAGGG CATGAACTGC ACCGGCGCCG ATGGCGCGGG CGGGCCGACC
ACGGACCCTT GCGGGCAATG CGACAATTGC CGCGGGATCA TGGCGGGCCA GCATGTGGAC
GTGATCGAGA TGGACGGCGC CAGCCAGACC AAGATCGACG ACATCCGCGC CAATGTGCTC
GACTCGGTCT ATTACGCGCC GGCCTCCGCG CGCTACAAGA TCTTCATCAT CGACGAGGTG
CACATGCTCT CGACCAGCGC GTTCAACGCG CTGCTCAAGA CCCTCGAAGA GCCCCCCGCC
CATGTGAAAT TCATCTTCGC CACCACCGAG ATCCGCAAGG TGCCCGTCAC CGTGCTCAGC
CGCTGCCAGC GGTTCGATTT GCGCCGGATC GAGCCGGAGG TGATGATCGC CCATCTGCGC
CGCATCGCCG GGCTGGAGCG CGCCGAGATC ACCGATGACG CGCTGGCACT GATCACGCGG
GCCGCCGAGG GGTCGGTGCG CGATGCCATG AGCCTGCTGG ATCAGGCGAT CAGCCACGGC
GCGGGCGAGA CCACCGCCGA GCAGGTGCGC GCCATGCTGG GCCTGGCGGA CCGGGGCCGG
GTGATGGACC TGTTCGACCT GGTGATGCGC GGCGACGCGG CGGGGGCGCT GACCGAACTG
TCGGCGCAGT ATTCCGACGG GGCCGATCCC ATGGCGGTGC TGCGCGATCT CGCCGAGGTG
ACGCACTGGG TCTCGGTGAT CAAGATCACC CCCGATGCCG CCGAGGATCC CACCGTCAGC
CCCGATGAAC GTGCCCGCGG GCAGGCGGCG GCGGCGGAGT TGCCCATGCG CGCACTGACC
CGGATGTGGC AGATGCTGCT CAAGGCGCTG GAGGAGGTCG CGATCAGCCC CAACGCCATG
ATGGCCGCCG AGATGGCGAT CATCCGGCTG ACCCATGTGG CCGACCTGCC CTCCCCCGAA
GATCTGGTGC GCAAGCTGCA GACCATGACG CCCCCACCCG CCACGCCCGG CGGCGGCGCG
GCCCCCGGCG GCCCCGGCAC GGGCGTCAGC GCGCGCGGAC ATGGCGCGGC CCCCGCCCCG
CGCGGCGGCG GTGTGCGCGC CTCCGCCGGT CCTGCACTGG CCATGGCCCA GGCCGATCCC
GACGCGCTGG CGCGGTTCCG GCGGTTCGAC GATGTGGTCG CCCTGATCCG CAGCCACCGG
GACGTGAAGC TCCTGGTCGA GGTTGAAGGC TGCCTGCGTC TGGCCGCCTA CAGCCCCGGC
CGGATCGAGT TCGCGCCGAC CGAGAACGCG CCGCGCGACC TCGCCGCCCG CCTCGCCGCC
CGCCTTCAAA GCTGGACCGG CGCCCGCTGG GCGGTCTCCG TGGTGGCCGA GGCCGACGCC
CCCACCATCG CCGAGACCCG CGACGCCGAA AAACTGGAGA TGGAGCGCAA CGCGCTGGAC
CACCCGCTCG TGGCCGCCGT CTTCGCCGCC TTCCCCAAGG CAAGGATCAC CGAAATCCGC
ACCCGCGAGG CCCTGACCCA GGAGGCCGCC ATCGAGGCGC TTCCGGAAGT CGAGGATGAA
TGGGACCCGT TCGAAGACGA CTAA
|
|---|
| Protein sequence | MSDTTTTGYQ VLARKYRPAT FADLIGQDAM VRTLRNAFQA DRIAQAFMMT GIRGTGKTTT
ARIIAKGMNC TGADGAGGPT TDPCGQCDNC RGIMAGQHVD VIEMDGASQT KIDDIRANVL
DSVYYAPASA RYKIFIIDEV HMLSTSAFNA LLKTLEEPPA HVKFIFATTE IRKVPVTVLS
RCQRFDLRRI EPEVMIAHLR RIAGLERAEI TDDALALITR AAEGSVRDAM SLLDQAISHG
AGETTAEQVR AMLGLADRGR VMDLFDLVMR GDAAGALTEL SAQYSDGADP MAVLRDLAEV
THWVSVIKIT PDAAEDPTVS PDERARGQAA AAELPMRALT RMWQMLLKAL EEVAISPNAM
MAAEMAIIRL THVADLPSPE DLVRKLQTMT PPPATPGGGA APGGPGTGVS ARGHGAAPAP
RGGGVRASAG PALAMAQADP DALARFRRFD DVVALIRSHR DVKLLVEVEG CLRLAAYSPG
RIEFAPTENA PRDLAARLAA RLQSWTGARW AVSVVAEADA PTIAETRDAE KLEMERNALD
HPLVAAVFAA FPKARITEIR TREALTQEAA IEALPEVEDE WDPFEDD
|
|---|
| |