| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0635 |
|---|
| Symbol | |
|---|
| ID | 5712094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 633409 |
|---|
| End bp | 635610 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641266543 |
|---|
| Product | putative sulfate permease with cyclic nucleotide-binding domain |
|---|
| Protein accession | YP_001531982 |
|---|
| Protein GI | 159043188 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily)
[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0466798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGTGG GGGTGAGCGG CCGCCCGAAG TCGGGCGCCG CGCCAGTCGT TCCCTCTGTC
GTGGCGGGGC TTCTGGTGGG GTTCAACCTG CTGGGACAGG CGGTGGCGCT CTCGGGGCTG
GTCTTTGCGG GCGCGCTGGC GGTGGGACTG GGGCTGAGTA CGGCGCTCCT GCTGGCCAGT
TGCATCGTGG CGACCTGCGC GCTGACGGCG ATTCCGGGGA TGCCGCCGAC CGCAGTGGGG
GCGTTGCAGA ACGTGCCGGT CGCGGCATTG CTGCCTGCGG CTTACCTTTT GGCGGACCCA
ACCGCGGCGG CCCTGAGCCC GGAGAGCCGG GTGGCGACCA TGCTGGCGCT GTTGGGCCTC
TCGGCGGTTG TCACCGGGGT CGGGATGCTG ATCCTGTCGG CGCTGGATGT GGGGCGGGTG
GTGCGGCTGA TGCCGCATCC GGTCTCTGCC GGGTTCCTGG CGAGCGCGGG CATGATCCTG
ATCCTCGCGG GCCTGTCGCG GATCGTGGAT GCACCGGCGC CTGGCCTGCA AGGTCTCGCC
CGCCTGCCCG TCGAGGCCCT GCCCGCCCTC GCGCTGACGC TCGGACTGAC GGGGGCGATC
GGTCTGCTGG CCCGGTGGCG CGCGGATCTC GGCCCTTTCC TTGCGGTCCT GCTGGCCTTT
CTGGCCTTCT ACGGGGTGCT GAGCGCCCAG GGGCTCGGCC CCGAAGACGC CCGCACCCTC
GGCTACCTGC CGCCGCGCAG CACGCAGGAG GCGCTGATCG GCTGGCACCC GGGCTTGTTC
GACGCGATTT CCTGGAGCTT CGTGTCGGGC CACGTCGCGC TGATCGCCGC CGCGGCGCTG
ATCGGCATTC TCGGCGCCAT GCTGAACCTG ACGGGGATCG AGCTGGCCCT GCGCACGGAT
ATCGAGACGC GCCGCGCCCT GTCGGTCACC GGCCTGACGA ATGTGGGTCT TGGCGCGATG
GGCGGCAGTA TCAGCTATGT CTCCTCTGTG AACACGGTCT CGATGCAGGC CCTGGGCGCG
CGCGGTCCGG TGGCACGGAT CGTTCTTCTG GGGTTTCTTG CAGCAAGCCT GGTCTACGCA
CCGGCGATCG TCGCCTTCAC GCCCACCTTC GTGGCGACCG GGCTGCTGGT CTATATCGGC
TACACGATCC TGTCGCGCTG GCTGTTGCAG CAATACCGCC AACAACCCCT CGCGGATTGG
GCGATCTCCG CCGGGATCGT GCTGGTGACG GTGGTCTTCG GCATCCTGCC AGCGATCGGC
TTCGGTATCG TTGCCGCCTC GCTGATCTTC GCGATCAGCT ACGCACGACT GCCCGTGGTC
ACGCGGCTCG CGGATCTGAA CGTACGGCGC AGTTCGGTGG ACCGGGGCCC GGCGCAAAGC
GCGGTGCTCG ACCGGGAGGC GCACCGGGTT CTGACCCTGA CCCTGCGCGG TTTCTTGTTC
TTCGGATCGG TGGAGCAGTT GCTGGAGCAT GTCCGCGCGG CCCTGAACCG GCCCAACAGG
CCCGACACGA TCCTGCTTGA TTTTGCGCGG GTGAGCGCGC TCGACAGCGC GGCGCTTGCC
GCCTTGCAGA AGCTCGATTT CCTCGCGCGC AACAGCCAGG TGCAGATCGT CATCACCGAA
GCCAGCCCCG CGGTGGCCGC AGCACTCGTC CGTCTGGAAG CGCTGCTCGG CCCGGACCCG
GCCATGCGGT TCGCGAGTGC GACGGACGCC GCGTTGGAGG CCGCCGAGGA CCGGCTGCTG
ACGCGACTGG AGGCGGCCGA GACAGGCGCG GGCGCGCGCG CCTTCCTCGA CGCCACGCTC
GGGGATGCCG CACTTGCGCA GCGTGTTTTG TCGATGATGA CCCGCGAGGA GGTCGCGGCG
GGGCAGCGTT TGATGGCCTG CGGCGACCGG GACACGGACG TGATCCTGGT GGAGCGCGGG
CAGCTGGCGG TGCTGGCCCC CACCCCGGAC GGGCGGATGC GCCGGATCCA ATCCCTGCGC
CCCGGAGCCC TGATCGGCGA GATTGCAAGC TATGCAGGCC TGCCCCGGGC CGCGGATGTG
ATCGCCGAAA CAGCCGCGAC CGTGTACCGG TTCAATCGGT CCGAGCTTGA CCAGCGCACC
AGGGACGACC CGGAACTTGC CGCGGCCTGG CACCGGATGA TCGCCACCGC GTTGTCGCGC
AAACACCACC GCACCTTGCG GATGCTGCGC GAGAGCCGCT GA
|
|---|
| Protein sequence | MSVGVSGRPK SGAAPVVPSV VAGLLVGFNL LGQAVALSGL VFAGALAVGL GLSTALLLAS
CIVATCALTA IPGMPPTAVG ALQNVPVAAL LPAAYLLADP TAAALSPESR VATMLALLGL
SAVVTGVGML ILSALDVGRV VRLMPHPVSA GFLASAGMIL ILAGLSRIVD APAPGLQGLA
RLPVEALPAL ALTLGLTGAI GLLARWRADL GPFLAVLLAF LAFYGVLSAQ GLGPEDARTL
GYLPPRSTQE ALIGWHPGLF DAISWSFVSG HVALIAAAAL IGILGAMLNL TGIELALRTD
IETRRALSVT GLTNVGLGAM GGSISYVSSV NTVSMQALGA RGPVARIVLL GFLAASLVYA
PAIVAFTPTF VATGLLVYIG YTILSRWLLQ QYRQQPLADW AISAGIVLVT VVFGILPAIG
FGIVAASLIF AISYARLPVV TRLADLNVRR SSVDRGPAQS AVLDREAHRV LTLTLRGFLF
FGSVEQLLEH VRAALNRPNR PDTILLDFAR VSALDSAALA ALQKLDFLAR NSQVQIVITE
ASPAVAAALV RLEALLGPDP AMRFASATDA ALEAAEDRLL TRLEAAETGA GARAFLDATL
GDAALAQRVL SMMTREEVAA GQRLMACGDR DTDVILVERG QLAVLAPTPD GRMRRIQSLR
PGALIGEIAS YAGLPRAADV IAETAATVYR FNRSELDQRT RDDPELAAAW HRMIATALSR
KHHRTLRMLR ESR
|
|---|
| |