| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0629 |
|---|
| Symbol | |
|---|
| ID | 5712088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 626365 |
|---|
| End bp | 627237 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641266537 |
|---|
| Product | periplasmic substrate-binding protein |
|---|
| Protein accession | YP_001531976 |
|---|
| Protein GI | 159043182 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1910] Periplasmic molybdate-binding protein/domain |
|---|
| TIGRFAM ID | [TIGR01764] DNA binding domain, excisionase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTCA ACGCCCCTGA CGCCCCGAGA TTTCTGACCA CCAAGGAGGT GGCGGATTTG
CTGCGGGTGC GGGAGCGGAA GGTCTATGAC CTGGCCGGCG CGGACGAGAT CCCCCATCGC
CGGATCACAG GGAAACTGCT GTTCCCGCGC GAGGAACTTC TCGACTGGAT CGAAGGAGAC
CGGCAGGCGA CCGCCCTGCC TCCGGTGCTG ACCGGGTCGC ATGATCCGTG GCTCGCCTGG
GCGGTCGGGG CCTCCGACTG CGGGCTGGCG GTGTTGCAGA ATGGCAGTGC CGAAGGGCTC
GCGCGCTTCG CGGCGCGAGA GGCCGCGTTC TGCGGGCTGC ACATCCCCGA AGACGACGGC
TGGAACGTGG GCAGCGTGCG GGCGCAGGGG GTGCGCGACT GCGTGCTGAT CGGATGGGCG
ATACGCCAAC GGGGGCTGCT GCTGTCCCCT GCCCTTGCCG CCGATGTCAA AGATGTGGCC
GCCCTGCGAG GCCAGCGTGT CGTGCTGCGC CAGCTGGGCG CCGGGGCGGC GGTATTGCTG
GAGCGGTTGC TGGACGATGC GGGGATGGCA CTGTCCGACC TGGTCACGGG GACGGATGTG
GCCCGAACCG AGCACGAGGC GGCGGAGGCG GTCGCCTCCG GCGAGGCGGA CGCGGCGCTG
GGACTTGCGG CCATGGCACG GCAGTTCAAG CTGGGCTTCG TGCCGATCGT GGAGGAACGC
TTCGACTTGC TGGTCGACCG GGCGTTCTAT TTCTCGGATC CGTTCCAGCG CCTGCTGCAA
TTCGCGTCAA CGCCCGCGGC CTTGGAAAAG GCGCGGGCGC TGGGGGGCTA CGACGTGTCC
GAGCTTGGCA CGGTCCGCTG GAACGGACCG TGA
|
|---|
| Protein sequence | MDLNAPDAPR FLTTKEVADL LRVRERKVYD LAGADEIPHR RITGKLLFPR EELLDWIEGD
RQATALPPVL TGSHDPWLAW AVGASDCGLA VLQNGSAEGL ARFAAREAAF CGLHIPEDDG
WNVGSVRAQG VRDCVLIGWA IRQRGLLLSP ALAADVKDVA ALRGQRVVLR QLGAGAAVLL
ERLLDDAGMA LSDLVTGTDV ARTEHEAAEA VASGEADAAL GLAAMARQFK LGFVPIVEER
FDLLVDRAFY FSDPFQRLLQ FASTPAALEK ARALGGYDVS ELGTVRWNGP
|
|---|
| |