| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0617 |
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| Symbol | clpB |
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| ID | 5712071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 609070 |
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| End bp | 611685 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266520 |
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| Product | chaperone protein clpB |
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| Protein accession | YP_001531964 |
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| Protein GI | 159043170 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.995797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGG AAAAGTTCAC GGAACGGTCG CGCGGGTTCC TTCAGGCTGC GCAGACAATC
GCGATGCGGG AAAACCACCA GCGCATGGTG CCCGAGCATC TGTTGAAGGC CCTTCTGGAT
GACGAGGAAG GCTTGGCCGC CAACCTGATC GCCCGTGCGG GCGGCGACGC GGCCCGCGTG
CGCGAGGCGC TTGCCGCGGC CCTCGACAAG CTGCCCAAGG TGTCCGGCGA CGGCGCCCAG
ACCTATCTCG ATCAACAGAC CGCGAAGGTT CTGGACGAGG CCGAAAAGCT CGCGACCAAG
GCCGGGGACA GTTTCGTGCC CGTCGAACGC ATCCTGACCG CGCTTGCCGT GACCAAGTCC
GGTGCCAAGA CCGCCCTGGA AGCGGGCGGC GTCTCGGCGC AGGCGCTGAA TGGCGCGATC
AACGATATCC GCAAGGGGCG CACGGCCGAC ACCGCGTCGG CGGAATCGGG GTATGACGCG
CTCAAGAAAT TCGCGCGCGA CCTGACCGAG GCCGCCGCGG ACGGCAAGAT CGATCCGATC
ATCGGGCGCG ACGAGGAAAT TCGGCGCGCG ATGCAGGTCC TCAGCCGCCG GACCAAGAAC
AACCCTGTCC TGATCGGCGA GCCGGGCGTC GGCAAGACCG CCATCGCCGA GGGCCTCGCC
CTGCGGATCA TCAATGGCGA TGTGCCGGAG TCCCTGCGCA ACAAGAAGCT GATGGCGCTG
GACATGGGCT CGCTCATCGC GGGCGCGAAA TACCGTGGCG AGTTCGAGGA GCGGTTGAAA
TCCGTCCTGT CCGAAGTGAC GGCGGCGGCG GGCGAGATCA TCCTGTTCAT CGACGAGATG
CACACGCTCG TGGGCGCGGG CAAGGCGGAT GGGGCGATGG ACGCCTCCAA CCTGCTGAAA
CCGGCGCTGG CGCGGGGCGA GTTGCACTGC GTGGGGGCGA CGACGCTCGA CGAGTATCGC
AAATACGTGG AAAAGGACGC GGCGCTTGCC CGCCGGTTCC AGCCGGTCAT GGTGCAGGAG
CCCACGGTCG AGGATACCGT GTCGATCCTG CGCGGCATCA AGGAGAAATA CGAGTTGCAC
CACGGTGTGC GGATCTCGGA CTCGGCCCTG GTGGCGGCGG CGACGCTGAG CCATCGTTAT
ATCACCGACC GGTTCCTGCC GGACAAGGCG ATCGACCTCG TGGACGAGGC CGCGAGCCGG
TTGCGCATGG AGGTGGACAG CAAGCCCGAG GAGCTCGACG CGCTCGACCG CGAGATCCTG
CAAAAGCAGA TCGAGGCGGA GGCCTTGCGC CTGGAGGATG ACGCGGCCTC GCGCGAGCGG
CTGGCCAGCC TTGAAAAGGA CCTGTCGGAC CTGCAGCAGC GCAGCGCCGA GATGACCGCC
CAGTGGCAGT CCGAGCGCGA CAAGTTGGCC TCGGCTCGCG ACCTGAAGGA ACATCTCGAC
AAGGCGCGCG CCGAGTTGGA GATCGCCAAG CGGGAGGGCA ACCTCGCCCG CGCGGGGGAG
TTGTCCTATG GCGTCATTCC GGGGCTGGAG AAGCAGCTGG CCGAAGCCGA GAGCGGCGAG
GGCGACGTGA TGGTCGAAGA GGCCGTGCGT CCCGAGCAGA TCGCGAGCGT TGTCGAACGC
TGGACCGGTA TTCCGACCTC CAAGATGCTG GAGGGGGAGC GCGAGAAGCT CTTGCGCATG
GAAGAGGAGA TCGGGCGCCG GGTGATCGGG CAGAAGACCG CCGTGAATGC CGTGGCCAAT
GCGGTGCGCC GGGCGCGCGC GGGGCTGAAC GACGAGAACC GGCCCTTGGG CTCGTTCCTC
TTTCTCGGGC CGACCGGGGT CGGCAAGACC GAGCTGACCA AGGCCGTCGC CGAGTTCCTG
TTCGACGACG ACAGCGCCAT GGTGCGGATC GACATGTCCG AATTCATGGA GAAACACGCG
GTCGCGCGTC TGATCGGGGC CCCTCCGGGG TATGTCGGGT ATGACGAGGG CGGGGTGCTG
ACCGAAGCGG TGCGGCGCCG GCCCTACCAG GTCGTGCTGT TCGATGAGGT CGAGAAGGCC
CACCCGGACG TGTTCAACGT GCTCCTGCAG GTGCTCGACG ACGGTGTGCT GACCGACGGG
CAGGGGCGCA CGGTGGACTT CAAGCAGACG CTGATCGTGC TGACCTCGAA CCTCGGGGCG
CAGGCGCTCA GCCAATTGCC CGATGGCGCG GACGCCAGTG CGGCCAAGCG GGACGTGATG
GACGCGGTGC GCGCCCATTT CCGGCCCGAG TTCCTGAACC GGCTGGACGA GACGATCATC
TTCGACCGCC TGGTGCGGGA CGACATGGAC GCGATTGTGG ATATCCAGCT CGCCCGGCTG
CAGAAGCGCC TGGATGCGCG CAAGCTGACC CTGGCGCTGG ACGATGCGGC GCGCAGCTGG
CTTGCGGATG AAGGCTATGA CCCTGTGTTC GGGGCCCGGC CCCTCAAGCG CGTGATCCAG
CGGGCGCTGC AGGACCAGTT GGCCGAGATG ATCCTGGCCG GGGACGTGAC CGACGGCGAG
ACCATTCCGG TCAGCGCCGG GCCGGACGGG CTGCTGGTCG GCGACAGGGT GTCGACCTCC
CGCAGGGTTC CGCCGCAGGA CGCCGTCGTC CACTGA
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| Protein sequence | MNMEKFTERS RGFLQAAQTI AMRENHQRMV PEHLLKALLD DEEGLAANLI ARAGGDAARV
REALAAALDK LPKVSGDGAQ TYLDQQTAKV LDEAEKLATK AGDSFVPVER ILTALAVTKS
GAKTALEAGG VSAQALNGAI NDIRKGRTAD TASAESGYDA LKKFARDLTE AAADGKIDPI
IGRDEEIRRA MQVLSRRTKN NPVLIGEPGV GKTAIAEGLA LRIINGDVPE SLRNKKLMAL
DMGSLIAGAK YRGEFEERLK SVLSEVTAAA GEIILFIDEM HTLVGAGKAD GAMDASNLLK
PALARGELHC VGATTLDEYR KYVEKDAALA RRFQPVMVQE PTVEDTVSIL RGIKEKYELH
HGVRISDSAL VAAATLSHRY ITDRFLPDKA IDLVDEAASR LRMEVDSKPE ELDALDREIL
QKQIEAEALR LEDDAASRER LASLEKDLSD LQQRSAEMTA QWQSERDKLA SARDLKEHLD
KARAELEIAK REGNLARAGE LSYGVIPGLE KQLAEAESGE GDVMVEEAVR PEQIASVVER
WTGIPTSKML EGEREKLLRM EEEIGRRVIG QKTAVNAVAN AVRRARAGLN DENRPLGSFL
FLGPTGVGKT ELTKAVAEFL FDDDSAMVRI DMSEFMEKHA VARLIGAPPG YVGYDEGGVL
TEAVRRRPYQ VVLFDEVEKA HPDVFNVLLQ VLDDGVLTDG QGRTVDFKQT LIVLTSNLGA
QALSQLPDGA DASAAKRDVM DAVRAHFRPE FLNRLDETII FDRLVRDDMD AIVDIQLARL
QKRLDARKLT LALDDAARSW LADEGYDPVF GARPLKRVIQ RALQDQLAEM ILAGDVTDGE
TIPVSAGPDG LLVGDRVSTS RRVPPQDAVV H
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