| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0584 |
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| Symbol | kpsE |
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| ID | 5712038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 574921 |
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| End bp | 576630 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641266487 |
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| Product | capsule polysaccharide export |
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| Protein accession | YP_001531931 |
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| Protein GI | 159043137 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3524] Capsule polysaccharide export protein |
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| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACCA AGGCGAGAGC TAAGAAGTAC CGGATTCGGC GCCGCGATGT CGCAGACAGC
CTCGCCCTTC CGGCGGGGGA TCTGGTGCTG CCGGACCCGG ATGCCGAATT ACAGGCAGAC
AACGCGATGG AACAGGCGAT GCGGTCCGCG GCTTCTCCTG AAAAGCCCCC TGCCCCTTCC
AGGACCGAGA AAGCCCCCGC GCCCGAAAAG CCAACGATGC AAGCGGCGGC CAATGCCGCT
GCACAAAGGA CTGCTAAACC GCGCATGGCC AAAGCGCGGC ACATGCGCAA AGGCTCCAAA
CCCGATCCCG ACAGTGATGC CGCGATACTC GCCGAAGGTC TGACGGGCCG GCAATTGCGT
ATTGCCCGTC GGGTCGCAAA TCGGCACGGG CTCGATCCGG CGTCGGACAT CGAAGCGGTC
CGAATGCTGC GCAAGAAGGG CATTGACCCT TTCACCCGGG AGACGATCCT CGATCTGGTA
TCGGACAAAT CGCGCAAGAA CCTGCCGCAA ACGGTCCCAC AACCCCAAGT CGCCTCTCCG
GAGGTCACGA CCGAAGCGGA CATCGCGCGG GAAGTGCGCA AGATCCAACA GGATATCGCA
CGGCGGCGGC GGTTGAAGAT GACGCTTCTG GTGGCGCGTT TGGCCTTCTT CGTACTGCTG
CCCACTGCGC TTGCGGGCTA CTACTTCTTC CGCATGGCCA CGCCCATGTT CGCCACCCAT
TCGGAGTTCG TGATCCAGCA GGCGGAGTCC CAAGCCGGGC CTGGTGGTCT TGGGGGCATG
TTCTCCGGCA CGATGCTGGC GACGACCCAG GACGCTGTGG CGGTCCAGTC CTACCTCACG
TCCCGCGAGG CGATGCTGCG TCTCGATGCG GATCTCGGTT TTCGCGATCA CTTCTCATCA
CCGGAAATCG ACGCATTACA GAGGCTGGAT GCGGACGCCA CATACGAAGA TGCCTACGAC
ATCTACCGAA AACGGGTAAA GATCAGCTTT GATCCAACCG AGGGGATCGT GCGGATGGAA
GTGGCTGCCG CCGACCCCCA GACGAGCAAG GCCTTTTCCG AGGCGCTGCT CTCTTATGCG
GAACAGCAGG TTGATGACCT GACCCAACGC CTGCGCGCAG ACCAGATGCG CGGCGCACGG
GAGAGTTTCG ACGACGCCGA AACGATGGTA CAGGCCGCCC AGACCCGGGT CCTCGACCTC
CAGCAGGCGC GCGGTGTCTT GAGCGCGGAC CTCGAAGTGT CGAGCCTGAT GTCCCAGATT
TCGACACTTG AGGTAGAACT CAACACCGAA AAACTGCGCT TGCAGGAGCT CCTTGTGAAC
GCGCAGCCCA ATCAAAGCCG CGTCGCGATC CTGGAGGGCA ATATCGCAAG GCTGACCCGC
CTGATCGAGG ATCTGCGTGG CCAGATGACC GAAGGCGGCA GTTCCGGGGC GTCCCTGGCG
CGGATCTCCG GAGAGCTTGT GATTGCCCAG GCAGATCTCG AAACGCGGCA GCTTATGCTC
AGCCAGGCTC TGCAGCAGCT CGAGACAGCC CGTATTGAGG CCAACAGGCA AGTGAGGTAT
CTGTCCACGA GTGTCAGTCC GATCGCGCCG GATGAAGCCA GCTATCCGCG AGCATTCGAG
AACACCTTTC TCGCGTTTCT CGTATTTGCA GGCATCTACC TGATGATCTC TCTGACGGCG
TCGATCCTTC GGGAACAGGT ATCCAGCTAG
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| Protein sequence | MTTKARAKKY RIRRRDVADS LALPAGDLVL PDPDAELQAD NAMEQAMRSA ASPEKPPAPS
RTEKAPAPEK PTMQAAANAA AQRTAKPRMA KARHMRKGSK PDPDSDAAIL AEGLTGRQLR
IARRVANRHG LDPASDIEAV RMLRKKGIDP FTRETILDLV SDKSRKNLPQ TVPQPQVASP
EVTTEADIAR EVRKIQQDIA RRRRLKMTLL VARLAFFVLL PTALAGYYFF RMATPMFATH
SEFVIQQAES QAGPGGLGGM FSGTMLATTQ DAVAVQSYLT SREAMLRLDA DLGFRDHFSS
PEIDALQRLD ADATYEDAYD IYRKRVKISF DPTEGIVRME VAAADPQTSK AFSEALLSYA
EQQVDDLTQR LRADQMRGAR ESFDDAETMV QAAQTRVLDL QQARGVLSAD LEVSSLMSQI
STLEVELNTE KLRLQELLVN AQPNQSRVAI LEGNIARLTR LIEDLRGQMT EGGSSGASLA
RISGELVIAQ ADLETRQLML SQALQQLETA RIEANRQVRY LSTSVSPIAP DEASYPRAFE
NTFLAFLVFA GIYLMISLTA SILREQVSS
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