Gene Dshi_0553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0553 
Symbol 
ID5712006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp539847 
End bp540614 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content60% 
IMG OID641266455 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001531900 
Protein GI159043106 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTGGC AAGACCGCTT CAGCCTGCAA GACAAGACCG CCCTTGTCAC CGGGGCCTCA 
TCCGGGATCG GCAGAGCCAT TGCCGAGGTG TTCGCCGATG CCGGCGCTGA TATTGTCGGC
CAAGGACGTG ACTTGGACCG CTTGACGGAT CTCGGCGCGC AGATCAAGAC CACGGGGCGC
CAGTTCGCGG CGATCACCGG CGATCTGGCC GATCCGGATC AAACGCAGAA CGTCGCGGAC
CGAGCCCTTG CCGCTTTTGG CAAGATCGAC ATTCTCGTGA ATTCGGCTGG CATTGCCGTG
ACCGGCCCGG TGACAAACTA TGATCTCGAC GACTGGCAAC GCACGCTGGC CGTCAACCTG
ACCGCGCCAT TCATTCTATC CAAGGCAGTA ATGCCCGGGA TGATGCAGCG CAAACAGGGC
AAGATCATCA ACATATCCTC GCAGACAGGT GTGATCGCCT TGAAAGACCA TGCGGCTTAC
GCGACCTCCA AGGGGGGGCT CAATGCCCTG ACCAAATCCC TGATGACCGA GGCGGCCCCG
CATAATGTGC AGGTCAACGC CATCTGCCCC ACCGTGGTGC TGACCGAAAT GGGCAAGGAA
CTGTGGTCGG CGCCGGAGAG AAAAGACCCT TTCATTGCCC GCACGCCACT CGGGCGATTT
GGGGAGCCGA TCGAGATCGC GGATATGGCA TTGTACTTGG CGTCGCCCGC TTCGGACCTG
GTCAATGGCG CGGTCATGAT GATCGAAGGT GGGTATTCCA GCATATGA
 
Protein sequence
MPWQDRFSLQ DKTALVTGAS SGIGRAIAEV FADAGADIVG QGRDLDRLTD LGAQIKTTGR 
QFAAITGDLA DPDQTQNVAD RALAAFGKID ILVNSAGIAV TGPVTNYDLD DWQRTLAVNL
TAPFILSKAV MPGMMQRKQG KIINISSQTG VIALKDHAAY ATSKGGLNAL TKSLMTEAAP
HNVQVNAICP TVVLTEMGKE LWSAPERKDP FIARTPLGRF GEPIEIADMA LYLASPASDL
VNGAVMMIEG GYSSI