| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0547 |
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| Symbol | ugpB4 |
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| ID | 5712000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 534071 |
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| End bp | 535414 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641266449 |
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| Product | ABC-type sugar / sn-glycerol 3-phosphate transport protein |
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| Protein accession | YP_001531894 |
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| Protein GI | 159043100 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTC TGAGAAATCT GTTGTGCTCT GCCGCCGTCG CGAGCGTGAT GGCATCCGGC
GCCATGGCCG ATGGCCACGG TTGGAGCTTG AAGGACGCAG CCGCGCCTTA CGCGGGCACG
ACCGTCGATG TCGTGTTCCT GTTGCGCCCC GGCTACGAGG CGATCGAGGC GATGTTGCCT
GCCTTCGAAG AGGAGACCGG CATCAAGGTC AACGTGATCA AGCACCCCTA TGAGAACGCG
CTTGGCGAAC AAGTCCGCGA TTTTGTGGCG GGTGGCGACC TTGATGTCGC GCTGATCGAT
CTTGTCTGGA TCGGGAGCTT TGCTGAGAAC GAATGGATCC TGCCTCTGGC CGATGTCCAG
GCCAAGTTCC CTGATGCGGT TGACCCGGAC CTGGATATCG ACGACTTCTT TCCTCTTGTG
CTCAACGCCT TTGGCGGCTG GAACGACACC ATCTATGGCC TGCCGTTCGA CAACTATTCG
GGCTTGATGT TCTACAACCG CTGCATGCTC GAAGAGGCAG GTTTCGACGG GCCGCCGTCG
ACATGGGAAG AACTGAAGGA CGTTTATGGC CCGGCGCTGA CCAAGGATGG AAAGTACGCT
TTTGCCTTGC AGTCCAAGCG GAATGAAACC CAGTCCGCAG ACAGCTTCGC ACGGATGTTG
TGGCCCTTTG GCGGCTCCTT CCTGAACGAG GAATTCCGGT CCAACCTTAT GAGCGAAGGA
AGCCAGGCGG GCCTGAAGTT CCGCCAGGAG CTCATGGAGT ACATGCCCGA TGGCATCGTC
GCTTATGATC ATGCGGAAAC GGTGAACGCG TTCTCGCAGG GCGATGTGGC GATGATCACC
GAATGGTCTG CATTCTACTC TTCGGTCGTT TCTCCCGAGA CATCGCGGGT CGCGGATTGC
GTCGAGATCG CGCCCGAGCC GATGGGGCCT GCCGGTCGCA AACCGGCTCT GGGCGGCTTC
TCTCTCGCGG TGGCCTCGCA GGCGGACGAG GCTGAGCAGG CTGCTGCATA TCTGTTCATT
CAGTGGGCAA CATCCAAGGC AAACGCGCGC GAATACCTTG AGCGTGGTGG CGTTCCGGCC
CGCCAGTCCG TTTATCAGCA AGACGGTCTG GAAGAGTTCA AGTTCGTCCC GGCGCTGGTG
GAAAGCTGGC AGGACGGTGT GCCTGAGTTC CGCCCGCGCT TTGCGGAATG GCCTGAGATC
ACCGAGATCG TGCAGGAGTG GGGCACCAAG ATGATGCTCG GCGAAGTCAC CACCGAAGAG
GGTGCGCAGG AAATCGGCAC CCGCATGGAA GAGGTGCTTG ACGCCGCCGG CTACTACTCG
GGCGAAAAGC CGCTCGCCCA GTAA
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| Protein sequence | MKTLRNLLCS AAVASVMASG AMADGHGWSL KDAAAPYAGT TVDVVFLLRP GYEAIEAMLP
AFEEETGIKV NVIKHPYENA LGEQVRDFVA GGDLDVALID LVWIGSFAEN EWILPLADVQ
AKFPDAVDPD LDIDDFFPLV LNAFGGWNDT IYGLPFDNYS GLMFYNRCML EEAGFDGPPS
TWEELKDVYG PALTKDGKYA FALQSKRNET QSADSFARML WPFGGSFLNE EFRSNLMSEG
SQAGLKFRQE LMEYMPDGIV AYDHAETVNA FSQGDVAMIT EWSAFYSSVV SPETSRVADC
VEIAPEPMGP AGRKPALGGF SLAVASQADE AEQAAAYLFI QWATSKANAR EYLERGGVPA
RQSVYQQDGL EEFKFVPALV ESWQDGVPEF RPRFAEWPEI TEIVQEWGTK MMLGEVTTEE
GAQEIGTRME EVLDAAGYYS GEKPLAQ
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