Gene Dshi_0328 details

Gene Information

• Locus tag: Dshi_0328
• Symbol: yidC
• ID: 5711578
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: -
• Start bp: 315114
• End bp: 316934
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641266224
• Product: putative inner membrane protein translocase component YidC
• Protein accession: YP_001531678
• Protein GI: 159042884
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0706] Preprotein translocase subunit YidC
• TIGRFAM ID: [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain; [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 40
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACGACC AGAACAAGAA CCTCATTCTC GCCACGGCGC TCAGCTTTCT GGTGATCCTT 
GTCTGGTTCC TTCTTTTCCC ACCGGAAGAG CCGGTGACCG ACCCCAACGC ACCGACCCAG 
ATCACGCAAT CGGGCGAGAC GGCCGATGTC GCCCTGACAC CGCCTGCGGC CGTGACCGAA 
GCCGCCCCGG GTGCCGCCCC GCAAACAGCC GCGACCCCGA CCGAGAACGC CCCGCGGGTC 
CAGATCGACA CCCCTGCGCT GGAGGGGTCG ATCTCTCTTC TCGGGGGGCG GATAGATGAC 
CTGTCCCTGA GGAACTACAA CGAAACCCTG GAGCCGGACT CGCCGATCGT GCGCCTGCTG 
TCGCCGGTGG ACGCGCCCGG AGCCTACTAT GCGCTCTATG GTTGGGCCCC GGCCGGCACC 
CTGTCCTTTG ACGATGTGCC GGGTGCCAAC ACCCTCTGGA CCGTGGAAAG CGGCGACACC 
CTGACGGTGG ACACCCCCGT GGTGCTGCGC TGGGAGAACG GCAACGGCCT GATCTTCCGC 
CGCACCCTCG CGGTGGACGA CGATTTCATG TTCACGGTGA CCCAGAGCGT CGAGAACACC 
ACCGAAACCG ACAAGCGGAT GCAGCCCTAC GGCATCATCG CGCGACATGG CGAGCCCGAC 
ACGATCAACT TCTTCGTGCT GCACGAGGGC GTGGTGGCCA TGGCCGATGG CAGCCTGATC 
GAATCCGACT ATGACGACAT GCTCGACTAC GATTTCGTCG AACGGGAAGG CGCCCGGGCC 
GAGGTCGAAC AGATCGAGCA GAACGGCTGG ATCGGCTTCA CCGACAAGAA CTGGATGACC 
ACCCTCATCC CGACGCCCGG GCAGCCTTTC ACCTCCGTGG CGAAATACGT GGGCAACGCC 
GACATCTACC AGACCGAGAC CCGCCTGCCG ACGCAAACCG TGCCCGGGGG ACAGACCGTG 
ACGGTCGAGA CCCGGCTCTT TGCCGGGGCC AAGGAGTGGG AAGCCATCCG CGGCTACGAG 
CGCGAGCTGG GCATCGAAGG CTTCATCGAC AGCATCGACT GGGGCTGGTT CTACTTCCTG 
ACCAAGCCGA TCTTCTTCGT TCTGCACGAG TTGAACCTTC TGATTGGCAA CATGGGCGTC 
GCGATCATCG TCCTGACCCT GCTGATCAAG GCGCTTTTGC TGCCGCTGGC CTGGAAGTCC 
TATGTCTCCA TGGCGCGCAT GAAAGAGTTG CAGCCCGAGA TGGAGAAGCT GAAGGAGAAG 
GCGGGCGATG ACCGCCAGAA GCTCCAGGTT GCGATGATGG AGCTCTACAA GAAGGAAAAG 
GTGAACCCCG CCGCGGGCTG TCTGCCGATC CTGCTCCAGA TCCCGATCTT CTTCTCGCTC 
TACAAGGTGA TCTTCGTCAC GATCGAGCTG CGTCACGCCC CGTTCTTCGG CCCGTTTCAG 
GACCTGTCGG CGCCCGACCC GACCTCGATC ATGAACCTGT TCGGCCTGCT GCCCTTCGCC 
TCGCCCGAGC CCGGCTCGAT CCTGGCGCTG ATCTTCATCG GGATCCTGCC GCTGCTGCTG 
GGGATTTCCA TGTGGCTCCA GCAGAAGCTG AACCCGGCGC CCACGGACCC GACCCAGGCG 
ATGATCTTCG CCTGGCTGCC CTGGGTGTTC ATGTTCATGC TTGGCACCTT CGCCAGCGGC 
CTGATCGTCT ACTGGATCGC GAACAACGTC ATCACCTTCG CCCAGCAGTA CTTCATCATG 
CGGCGCCACG GGTACAAACC CGATCTTTTC GGCAACATCG TGGCCAGCTT CAAGAAGAAG 
AAGCCCTCGG AGGACAAGTG A 

 

Protein sequence

MDDQNKNLIL ATALSFLVIL VWFLLFPPEE PVTDPNAPTQ ITQSGETADV ALTPPAAVTE 
AAPGAAPQTA ATPTENAPRV QIDTPALEGS ISLLGGRIDD LSLRNYNETL EPDSPIVRLL 
SPVDAPGAYY ALYGWAPAGT LSFDDVPGAN TLWTVESGDT LTVDTPVVLR WENGNGLIFR 
RTLAVDDDFM FTVTQSVENT TETDKRMQPY GIIARHGEPD TINFFVLHEG VVAMADGSLI 
ESDYDDMLDY DFVEREGARA EVEQIEQNGW IGFTDKNWMT TLIPTPGQPF TSVAKYVGNA 
DIYQTETRLP TQTVPGGQTV TVETRLFAGA KEWEAIRGYE RELGIEGFID SIDWGWFYFL 
TKPIFFVLHE LNLLIGNMGV AIIVLTLLIK ALLLPLAWKS YVSMARMKEL QPEMEKLKEK 
AGDDRQKLQV AMMELYKKEK VNPAAGCLPI LLQIPIFFSL YKVIFVTIEL RHAPFFGPFQ 
DLSAPDPTSI MNLFGLLPFA SPEPGSILAL IFIGILPLLL GISMWLQQKL NPAPTDPTQA 
MIFAWLPWVF MFMLGTFASG LIVYWIANNV ITFAQQYFIM RRHGYKPDLF GNIVASFKKK 
KPSEDK