| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0309 |
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| Symbol | rpoA |
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| ID | 5711559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 298455 |
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| End bp | 299486 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641266205 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001531659 |
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| Protein GI | 159042865 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.515116 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCGA CACCTATGAT CCACAAGAAT TGGCAAGAAC TCATCAAACC GACGCAACTG
GAGGTCAAGC CGGGCAATGA ACCCGCGCGC CAGGCCACCG TCGTTGCGGA ACCGCTGGAG
CGGGGCTTCG GCCTGACCCT GGGCAACGCG TTGCGCCGGG TGCTGATGTC GTCGCTGCAG
GGCGCGGCCA TCACCAGCGT CCAGATCGAC AACGTGCTGC ACGAATTTTC CAGCGTTGCG
GGCGTGCGCG AGGATGTCAC CGACATCGTG CTGAACCTCA AGCAGGTCGC GATCCGCATG
GAAGTCGAAG GCCCCAAGCG GGTGTCGATC TCCGCCAAGG GTCCGCGGGT CGTCACCGCC
GGGGATATCT CGGAGAGTGC GGGGATCGAG GTGCTGAACC GCGATCACGT GATCTGTCAC
CTCGACGAGG GCGCGGACCT GTTCATGGAG CTGATCGTGA ACACCGGCAA GGGCTATGTC
TCGGCGGACA AGAACCGTCC CGAGGATGCG CCCATCGGCC TGATCCCGAT CGACGCGATC
TTCTCGCCGG TCAAGAAGGT GTCCTATGAC GTGCAGCCCA CCCGTGAGGG CCAGGTGCTG
GACTATGACA AGCTGACGTT GAAGCTGGAA ACGGACGGAT CGGTCACGCC GGACGATGCC
GTGGCCTATG CCGCGCGGAT CCTGCAGGAC CAGCTGTCGG TTTTCGTCAA CTTCGACGAG
CCGGAAGCGG CCCGCAGCCA GTCCGAAGAG GACGATCTGG AGTTCAACCC GCTTCTGCTG
AAGAAGGTGG ACGAGCTGGA GCTGTCGGTG CGCTCGGCCA ACTGCCTGAA GAACGACAAC
ATCGTCTATA TCGGCGATCT GATCCAGAAG ACCGAGGCCG AGATGCTGCG CACGCCGAAC
TTCGGCCGCA AATCCTTGAA CGAGATCAAG GAAGTGCTGT CGGGGATGGG GCTGCATCTG
GGGATGGATA TCCTGGATTG GCCGCCGGAG AACATCGAGG ACCTGGCCAA GAAGTTCGAA
GACCAGTTTT GA
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| Protein sequence | MEATPMIHKN WQELIKPTQL EVKPGNEPAR QATVVAEPLE RGFGLTLGNA LRRVLMSSLQ
GAAITSVQID NVLHEFSSVA GVREDVTDIV LNLKQVAIRM EVEGPKRVSI SAKGPRVVTA
GDISESAGIE VLNRDHVICH LDEGADLFME LIVNTGKGYV SADKNRPEDA PIGLIPIDAI
FSPVKKVSYD VQPTREGQVL DYDKLTLKLE TDGSVTPDDA VAYAARILQD QLSVFVNFDE
PEAARSQSEE DDLEFNPLLL KKVDELELSV RSANCLKNDN IVYIGDLIQK TEAEMLRTPN
FGRKSLNEIK EVLSGMGLHL GMDILDWPPE NIEDLAKKFE DQF
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