| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0179 |
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| Symbol | def1 |
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| ID | 5712104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 183047 |
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| End bp | 183610 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266074 |
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| Product | peptide deformylase |
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| Protein accession | YP_001531529 |
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| Protein GI | 159042735 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.340419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGCGCC CGGGGGGGGC GTGGATTACA TCAACCGGCA TGACCATTCG ACCGATCCTG
ATCCATCCCG ACCCGCGCCT CAAGAAGACC GTCGACCCGG TCGCCGAGAT CACCGACGAG
ATCCGGCAGC TGGCCGATGA CATGCTGGCC ACCATGTATG ACGCGCCGGG CATCGGGCTG
GCCGGGCCGC AGGTGGCCGC GATGACGCGG ATCATCACCA TGGATTGCGC CCCCAAGGAT
GGCGAGCCGG ACCCGATGGT TCTGATCAAT CCCGAGATCG TCTGGTCCTC GGAAGAGATG
AACACCTACG AGGAAGGCTG TCTGTCGATC CCCGAGATGT ACGCCGATGT GGAGCGTCCG
GCGGAGGTCG AGGTCCGCTG GACCACGCTG GAGGGCGGGG ACGCCAGTGC CAGGTGGGGC
GGGCTCCATG CCACTTGCGT GCAGCATGAG ATCGACCACC TGAACGGCAA GCTGTTCATC
GATTATCTCA AGCCGCTGAA GCGGCAGATG ATCACCCGCA AGATGGTGAA ACTGAAGCGG
GAGCGTGCCC GTGCCGAGGG CTGA
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| Protein sequence | MLRPGGAWIT STGMTIRPIL IHPDPRLKKT VDPVAEITDE IRQLADDMLA TMYDAPGIGL
AGPQVAAMTR IITMDCAPKD GEPDPMVLIN PEIVWSSEEM NTYEEGCLSI PEMYADVERP
AEVEVRWTTL EGGDASARWG GLHATCVQHE IDHLNGKLFI DYLKPLKRQM ITRKMVKLKR
ERARAEG
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