| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0139 |
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| Symbol | |
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| ID | 5711607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 137186 |
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| End bp | 138925 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266034 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001531489 |
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| Protein GI | 159042695 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.720717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCAC GCACCTCCCC GAACGCGGGC AAGGGGCTCG AAGAACTGGG TGCGATCCGT
CGCGCCAACA TGCCGTTGTT CGCCTGGGTC TTCGTGTTCT CGATCTTCGT GAACGCCCTG
ATGCTGACCG GGCCACTCTA CATGTTGCAG GTTTATGACC GGGTCCTGGG CAGCCAGTCG
GAAGAGACCC TGCTGGCGCT GTCGGTACTG GTCGCATTTC TGTTTTTGAT GATGGGGATC
CTGGATTGGG CCCGCGGGCG TGTGTTGGCG CGGGCCGGGG CGCGCATGCA GGACACCCTA
GACCAACGGG TGTTTTCGGC GTCGTTGCGC AAATCTTTGC GCCAGGGGCA GACCACGGCG
TCGACCGGGT TGCGCGACCT GGAGTCGATG CAGCGACTGT TGTCTTCGCC GGCTCTTCTG
GCGGTGTTCG ACATTCCGTG GACGCCGCTC TTCGTGGCCG CGATCTTCAT GTTTCACCCT
TGGCTGGGCT ATCTCGCCCT GGTGGGCGGG ACATTCCTGA TCCTGGTGAC GGTGCTGAAC
CAATGGCTGA CAAGTCGCCC GGTCAGCAAG GCGAACGAGG CCTCGGCCCG CGCCGAGATG
ATGTCGCAGC AACTGGCCGG GGGCGCGGAA ACCGTCGAAT CGCTCGGCAT GCGCGGCGCG
GCCTTCACAC GCTGGAGCAA GGTGCGCGCG GAGTCCCTGT CGGAGACGCT GACATCCTCG
GACCGGACCG GCGGCTTTTC CACCCTGACC AAGACATTCC GGCTGTTCCT GCAATCGGCG
ATGCTCGGGC TTGGCGCATA TCTCGTCCTG CAGGGGCAAT TGACCGCCGG GGCGATGATC
GCAGGCTCGA TCCTGATGGG CCGGGCCCTG GCGCCGATCG AGATGGCGAT CGGACAATGG
CCGCTGGTGC AGCGGGCGAT GAAGGGACGG CGCGACCTGA TCGAGTTGCT GGATGCCATC
CCGCCCGACC CGGAGCGGAC CCCCCTGCCC AAACCGAAGG CGCGGTTGGT GGTGGAGCAG
CTGATCGTGG TGCCCCCGGG CGAAGCGCAA GCGGCCCTGC GGAGTGTGAG CTTCACGGTC
TCGCCCGGGG AGGCGTGCGG GGTGATCGGG CAATCGGGCG CGGGCAAATC GACCCTGGCG
CGGGCGCTGA CCGGCATCTG GCCCGTGGCG GGCGGCAAGA TCCGGCTCGA TGGCGCGGCG
CTGGACCAGT TCGGCCCGGA TGTGCTGGGC ACCCATATCG GCTACCTGCC GCAACAGGTT
GTGCTCTTCG ACGGCACCAT TGCCGAGAAC ATCGCCCGGC TGGCCCCGCA GCCCGATGCC
CAGGCGGTGG TGGATGCCGC CAAGCGTGCG GACGCCCACG AGATGATCCT GAAGCTGCCC
AAGGGCTATG ACACGATGTT GCTCGGCAGC CAGACCCGGC TTTCAGGCGG GCAGATGCAG
CGGATCGGCC TGGCACGCGC ACTCTACGGC GATCCGGTGC TGCTGGTGCT GGACGAGCCG
AACTCGAACC TCGACAACTC CGGCAGCCAG GCCTTGAATG CGGCCGTGGC GCGGATGAAA
AAGGATGGCA AGGCGGTGCT GATCATGGCC CACCGGCCCG CAGCGATCGA GCAATGCGAT
ACGCTTCTGG TGCTGGAGGG CGGCTCGCGC AAGGCTTTCG GGCCACGGGA CGAGGTGCTG
AAATCCATGG TGTCGAACCA CAAGGAAATC CTGAAGAAAG CCGCTGGAGG CGTGTCATGA
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| Protein sequence | MAPRTSPNAG KGLEELGAIR RANMPLFAWV FVFSIFVNAL MLTGPLYMLQ VYDRVLGSQS
EETLLALSVL VAFLFLMMGI LDWARGRVLA RAGARMQDTL DQRVFSASLR KSLRQGQTTA
STGLRDLESM QRLLSSPALL AVFDIPWTPL FVAAIFMFHP WLGYLALVGG TFLILVTVLN
QWLTSRPVSK ANEASARAEM MSQQLAGGAE TVESLGMRGA AFTRWSKVRA ESLSETLTSS
DRTGGFSTLT KTFRLFLQSA MLGLGAYLVL QGQLTAGAMI AGSILMGRAL APIEMAIGQW
PLVQRAMKGR RDLIELLDAI PPDPERTPLP KPKARLVVEQ LIVVPPGEAQ AALRSVSFTV
SPGEACGVIG QSGAGKSTLA RALTGIWPVA GGKIRLDGAA LDQFGPDVLG THIGYLPQQV
VLFDGTIAEN IARLAPQPDA QAVVDAAKRA DAHEMILKLP KGYDTMLLGS QTRLSGGQMQ
RIGLARALYG DPVLLVLDEP NSNLDNSGSQ ALNAAVARMK KDGKAVLIMA HRPAAIEQCD
TLLVLEGGSR KAFGPRDEVL KSMVSNHKEI LKKAAGGVS
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