Gene Dshi_0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0105 
Symbol 
ID5711728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp104539 
End bp105249 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content62% 
IMG OID641266000 
Producthypothetical protein 
Protein accessionYP_001531455 
Protein GI159042661 
COG category[S] Function unknown 
COG ID[COG1432] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00288] conserved hypothetical protein TIGR00288 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCAAATC GCGACCGTCC CCTGCTTGCC GTTCTGATCG ACGCCGACAA CGTGCCCGCC 
AAATTCGCCG AAGCGATCCT GAAAGAGGTC GCCTCGATCG GCGAGCCTGC GTTGCGCCGG
GTCTATGGCG ACTGGTCCAG CGGGCGTCTG CGCAACTGGG CGGACAAGGT CCTGAGCCTG
GGGCTGGTGG CCCATCAGGA CACTGCCAAT ACCACGGGCA AGAATGCCTC CGACATCGGG
TTGGTGATCG ACGCCATGGA TATCCTGCAC GGCGGGCGGT TCGACGGCTT CGTTCTGGTC
AGCTCCGACA GCGATTTCAC CAGCCTCGCC AACCGGCTGC GCGAAGATGG CAAGGAGGTG
ATCGGCATCG GCGAGAAGAA AGCCCCCGAA AGCCTGCGCA ATGTCTGCAA TCGGTTCATA
TTCATAGAGA ATATCGTGCA GGCCGGGCCG GATGCGGCCG GGTCTGGCAA GGCCGCCCCG
CAGGAGCAGA TCACCGACGC GGTGCCGCTG ATCCTGAACG CCATGGACGA GATCAACCAG
GACGACGAAT GGTATCCGCT GGGTCAGCTC GGCCAGTATA TCGTCGCGGT GAACCCCGAT
TTCGACACGC GCAGTTACGG TCACCGCAAA CTCAGCAGCC TGATCGGAGA GCTCAAGCGC
TTCGAGACCA AGAAGGTGGG CAACCAGTTG ATGGTCCGGC GCCTCGACTA G
 
Protein sequence
MPNRDRPLLA VLIDADNVPA KFAEAILKEV ASIGEPALRR VYGDWSSGRL RNWADKVLSL 
GLVAHQDTAN TTGKNASDIG LVIDAMDILH GGRFDGFVLV SSDSDFTSLA NRLREDGKEV
IGIGEKKAPE SLRNVCNRFI FIENIVQAGP DAAGSGKAAP QEQITDAVPL ILNAMDEINQ
DDEWYPLGQL GQYIVAVNPD FDTRSYGHRK LSSLIGELKR FETKKVGNQL MVRRLD