| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0085 |
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| Symbol | ipmi1 |
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| ID | 5711708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 83697 |
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| End bp | 85100 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641265980 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_001531435 |
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| Protein GI | 159042641 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.362256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.223362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCC GCACGCTTTA CGACAAGATC TGGGATGCGC ACCTGGCCCA TGAGGCCGAG
GATGGCACCT GCCTGCTCTA TATCGACCGC CATCTGGTCC ACGAGGTAAC CAGCCCGCAA
GCCTTCGAAG GTCTGCGCAT GGCGGGCCGC ACCGTCCGCG CGCCGGACAA GACCATCGCC
GTGCCGGACC ACAACGTGCC CACGACGCTT GGCCGCGAGA ACCCCGACCA GATGACCGAG
GACAGCCGCA TTCAGGTCGA AGCCCTCGAC AAGAACGCCA AGGATTTCGG GATCCATTAC
TACCCGGTTT CCGACATCCG CCAGGGCATC GTCCATATCG TGGGGCCCGA GCAAGGTTGG
ACCCTGCCGG GCATGACCGT GGTCTGCGGT GACAGCCACA CCGCCACCCA CGGCGCGTTC
GGCGCGCTGG CGCACGGTAT CGGCACGTCG GAGGTCGAGC ATGTGCTGGC CACCCAGACC
CTGATCCAGA AGAAATCCAA GAACATGAAG GTGGAGATCA CGGGCAAGCT GCGCCCCGGC
GTGACCGCCA AGGATATCAC CCTCTCGGTG ATCGGCGCCA CGGGCACCGC GGGCGGCACC
GGCTACGTGA TCGAGTATTG CGGCGAGGCC ATTCGCGACC TGTCCATGGA AGGCCGCATG
ACCGTCTGCA ACATGGCAAT CGAAGGGGGT GCACGTGCGG GCCTGATCGC GCCGGACGAG
AAGACCTATG AATACGTGCA GGGCCGCCCC CATGCGCCGA AGGGCGCACA GTGGGAGGCC
GCGCTGGCCT GGTGGAAGAC CCTCTATTCC GACGACGACG CCCATTGGGA CAAGGTCGTC
ACCATCAAGG GCGAGGATAT CGCCCCCGTG GTCACCTGGG GCACCTCCCC CGAAGACGTG
CTACCGATCA GTGCCATGGT GCCCGCGCCG GAGGATTTCA CCGGCGGCAA GGTCGACGCG
GCCCGGCGCT CGCTCGACTA CATGGGCCTG ACCCCGGGCA CGCCGCTGAG CGAGATCGAG
ATCGACACGG TCTTCATCGG CTCCTGCACC AATGGCCGGA TCGAAGACCT GCGCGCCGCC
GCGGAAATCC TGAAGGGCAA GAAGATCGCC GTGAAGCGGG CGATGGTGGT GCCAGGCTCC
GGTCTTGTCC GCGCCCAGGC CGAGGAAGAA GGCCTTGCCG ACATCTTCAA GCAGGCCGGG
TTCGAATGGC GCATGGCGGG CTGTTCCATG TGCCTGGCCA TGAACCCCGA CCAGCTGAGC
GAAGGCGAGC GCTGTGCCTC TACCTCGAAC CGCAATTTCG AGGGGCGGCA GGGCTACAAG
GGGCGGACGC ATCTCGTCTC GCCCGCCATG GCCGCCGCCG CCGCGGTCAC CGGCAAGCTC
ACGGACGTGC GGGACCTGAT GTAA
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| Protein sequence | MTARTLYDKI WDAHLAHEAE DGTCLLYIDR HLVHEVTSPQ AFEGLRMAGR TVRAPDKTIA
VPDHNVPTTL GRENPDQMTE DSRIQVEALD KNAKDFGIHY YPVSDIRQGI VHIVGPEQGW
TLPGMTVVCG DSHTATHGAF GALAHGIGTS EVEHVLATQT LIQKKSKNMK VEITGKLRPG
VTAKDITLSV IGATGTAGGT GYVIEYCGEA IRDLSMEGRM TVCNMAIEGG ARAGLIAPDE
KTYEYVQGRP HAPKGAQWEA ALAWWKTLYS DDDAHWDKVV TIKGEDIAPV VTWGTSPEDV
LPISAMVPAP EDFTGGKVDA ARRSLDYMGL TPGTPLSEIE IDTVFIGSCT NGRIEDLRAA
AEILKGKKIA VKRAMVVPGS GLVRAQAEEE GLADIFKQAG FEWRMAGCSM CLAMNPDQLS
EGERCASTSN RNFEGRQGYK GRTHLVSPAM AAAAAVTGKL TDVRDLM
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