| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0042 |
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| Symbol | |
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| ID | 5711664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 43160 |
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| End bp | 43816 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641265936 |
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| Product | alanine racemase domain protein |
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| Protein accession | YP_001531392 |
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| Protein GI | 159042598 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
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| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00000221923 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGAGTGT CCGAGATCAC CGCACGGATC GGCGCCGCCG CCCGCAAGGC CGGCCGCGAT
CCCGCCGAGA TCACCTTGAT CGCCGTCTCC AAGGTTCAGC CCCTCGACCG CGTCGAGGCC
GTGCTGGCCG AGGGCCACCG GGTCTACGGC GAGAACCGCG TGCAGGAGGC GCAGGGCAAA
TGGCCCGCCT TCCGGGAGAA ATATTCCGGC ATCGACCTGC ACCTGATCGG CCCGCTGCAA
TCCAACAAGA CCCGCCCGGC GGTGGAGCTT TTCGACGCCA TCCACACCGT GGACCGCGCC
AAGCTCGCCC GCCGCCTCGC CGACCACGCG CAGGAGCGCG GGCAAAGCCC AGACATCTTC
GTGCAGGTCA ATACCGGCGA CGAGACCCAG AAGGCAGGCT GCGCCCTGTC CGAGGTGGAC
GCGCTCGTCA CCGAATGCCG CGCCCTGGAC TTGCCCCTGA AGGGCCTGAT GTGCATCCCG
CCCATCGACG AAGAACCCAG CCTGCATTTC GCCCTCTTGG CCAAGCTCGC CGCCCGCAAC
GGGCTGACGG GGCTGTCCAT GGGCATGAGC GGCGATTTCG AGAGTGCCAT CGCCCAGGGC
GCCACCCATA TCCGCGTCGG CTCCGCCATC TTCGGCGACC GGGTGAAACC CGCCTAG
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| Protein sequence | MGVSEITARI GAAARKAGRD PAEITLIAVS KVQPLDRVEA VLAEGHRVYG ENRVQEAQGK
WPAFREKYSG IDLHLIGPLQ SNKTRPAVEL FDAIHTVDRA KLARRLADHA QERGQSPDIF
VQVNTGDETQ KAGCALSEVD ALVTECRALD LPLKGLMCIP PIDEEPSLHF ALLAKLAARN
GLTGLSMGMS GDFESAIAQG ATHIRVGSAI FGDRVKPA
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