| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0015 |
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| Symbol | rnr |
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| ID | 5711593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 15472 |
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| End bp | 17727 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641265909 |
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| Product | ribonuclease R |
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| Protein accession | YP_001531365 |
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| Protein GI | 159042571 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.587853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGGT TTCCCACCAA AGACGAAGTT CTCGCCTGGA TCGAGGACAA TCCCGCCCGC
GCCAACAAGC GCGAGATCGC CCGTGCCTTC GGCATCAAGG GGGCCGCGCG CATCGACCTC
AAGCGGCTCC TGAAGGAGCT GGAGGGCAAG GGGCATCTGG AAAAGCGCAA GCGCAGCTAC
CGCGATCCCG AGAGCCTGCC GCCGGTCTCG GTCCTGAAGG TCGGGGATGC CGATGGCGAC
GGCGATCTCT TTGCCCGGCC ACTGGACTGG CAGGGCGCGG GGGCGGAGCC TGCGTGCCTG
ATCATCCCGC GCAAGGGCGA TCCGGCCCTG GCCGAGGGCG ACCGGATCCT CGCGCGTCTC
ACCAGGGTGG AGGGCGAGGA TTACGCCTAT GAGGCGCGGC TCATTCGCCG GATCGGCACC
GGGCCGCGCA AGATCCTCGG CATCCTGCGC AAGACCGCCG AGGGCGGGCG GATCGTGCCC
ATCGACAAGG GCGCGGACCG CGAATGGCGC GTGGCCCAGG GGGGCTTGCT GGGCGCGCAG
GACGGGGACC TGGTGGAGGC CGAGCAGGCC GGACCCAAGG GGCGCATGGG CCTGCCACTG
GCACGGGTGA CGCAGGTGCT GGGCGATCCG GGCGGGGCGA AGTCGGTCTC GCTGATCGCG
ATCCACCAGC ATGGCATTCT CGACGAATTC CCCGAGGCCG CCCTGGCGGA GGCCGAGGCG
GTCACAGCCC CCGAGCTGGG CGCGCGCACC GACCTGCGCG ACCTGCCGCT GATTACCATC
GACCCGCCCG ATGCCCGGGA CCGGGACGAC GCGGTCTGTG CGATCCCCGA TGACGACCCG
GCCAATCCCG GCGGCTTCGT GCTCTGGGTG GCGATTGCGG ATGTGGCCGC GGCGGTGCGC
CCGGGCGGCG CGCTGGACCG CGAGGCGCGC AAGCGCGGCA ACTCCACCTA TTTCCCCGAC
CGGGTGGTGC CGATGCTGCC CGATAGCCTG TCGGGGGATT TGTGCTCGCT GCACGAGGAT
GTGGACCGGG CCTGCATGGC GGTGCGGATG GTGATCGATG CCGAGGGCAC CAAGCGCGGC
CAGACCTTCC ACCGGGGGCT GATGCGGTCG CGCGCTTCGC TGGCCTACGG CGAGGTGCAG
GCGGCGGTGG ATGGCGATCC GACCGAACGG ACCGAGCCCC TGCTGGAGCC GATCCTGCGT
CCGCTGTTTG CCGCCTACGA GGCGCTGAAG GCCGCGCGGG CCCGGCGGCA ACCGCTGGAC
CTGGACCTGC CGGAGCGGCG CATCGCGCTC AGCGAGACGG GGGAGGTGAC CTCGGTGGCC
TTCCGCGACC GGCTGGAGGT GCACCGGCTG ATCGAGGAAT TCATGGTGCT GGCCAATGTG
GCTGCCGCCG AGACGCTCGC CAAGAAACGC ACGCCTCTCT TGTACCGCGT CCACGAGGAG
CCGGCCGAGA CCAAGCTCGA TGCGCTGCGC GAGACCGTGC AGGCGGCGGG GCTGACCTTG
GCCAAGGGGC GGGTGCTGCG CACGGCGGAC CTCAACCGGC TGCTGGCGCA GGCCGCGGGC
ACGGATGATG CGGAGTTGAT CAACATCTCC ACCCTTCGGT CGATGACCCA GGCCTATTAC
AGCCCCGAGA ATTTCGGCCA TTTCGGGCTG GCCTTGCAAA ACTACGCCCA TTTCACCTCG
CCCATCCGGC GCTATGCGGA CCTGATCGTG CACCGGGCAC TGATCACCGC GCATGGATTC
GGCGAGGACG GGTTGTCGGA GGCCGACATC GAGCGGCTGG ACGAGACCGG CAAGCTGATT
TCGGAAGCCG AGCGGCGGTC CATGGCCGCC GAGCGCGACA CGATCGACCG CTATCTCGCC
GCCTATCTCG CGGACCGGGT GGGCAACGAG TTTTCCGCGC GGATCAGTGG CGTGGCGCGG
TTCGGGGCGT TTGCGCGGCT GGACGAGACC GGGGCGGACG GGTTGATCCC GATCCGCACC
ATCGGGGCGG AGTTCTTTCA TTTCGACGCG GACGCGCAGG CGCTCGTGGG CTCCGACACG
GGCTTCCGGC TGGCCATGGG CCAGCGAGTG ACCGTGCGGC TGGCCGAGGC GGTGCCGGTG
ACGGGCGGCA TCGGGCTGGA GCTGCTCGCG GTGGAGGACG AGACCGTGCC CACCGGGCGC
AGGCGCGGCA AATCCCGGCC CGTGCGGCGC AAGATCGCGG CGAAGAAGGC CAAGGCGGGC
AAGCTGAAAA AGAAGCTCAA GCGCAAGCGG GTCTGA
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| Protein sequence | MDRFPTKDEV LAWIEDNPAR ANKREIARAF GIKGAARIDL KRLLKELEGK GHLEKRKRSY
RDPESLPPVS VLKVGDADGD GDLFARPLDW QGAGAEPACL IIPRKGDPAL AEGDRILARL
TRVEGEDYAY EARLIRRIGT GPRKILGILR KTAEGGRIVP IDKGADREWR VAQGGLLGAQ
DGDLVEAEQA GPKGRMGLPL ARVTQVLGDP GGAKSVSLIA IHQHGILDEF PEAALAEAEA
VTAPELGART DLRDLPLITI DPPDARDRDD AVCAIPDDDP ANPGGFVLWV AIADVAAAVR
PGGALDREAR KRGNSTYFPD RVVPMLPDSL SGDLCSLHED VDRACMAVRM VIDAEGTKRG
QTFHRGLMRS RASLAYGEVQ AAVDGDPTER TEPLLEPILR PLFAAYEALK AARARRQPLD
LDLPERRIAL SETGEVTSVA FRDRLEVHRL IEEFMVLANV AAAETLAKKR TPLLYRVHEE
PAETKLDALR ETVQAAGLTL AKGRVLRTAD LNRLLAQAAG TDDAELINIS TLRSMTQAYY
SPENFGHFGL ALQNYAHFTS PIRRYADLIV HRALITAHGF GEDGLSEADI ERLDETGKLI
SEAERRSMAA ERDTIDRYLA AYLADRVGNE FSARISGVAR FGAFARLDET GADGLIPIRT
IGAEFFHFDA DAQALVGSDT GFRLAMGQRV TVRLAEAVPV TGGIGLELLA VEDETVPTGR
RRGKSRPVRR KIAAKKAKAG KLKKKLKRKR V
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