| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0012 |
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| Symbol | dapE1 |
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| ID | 5711590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 13129 |
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| End bp | 14268 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641265906 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001531362 |
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| Protein GI | 159042568 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC CTGTTGCCCT GACCGCCGAT CTGATCCGCT GCCCGTCCGT GACGCCCGAG
GAGGGCGGCG CGCTGAGCCT GCTGGAGGCG CGGCTGTCGG CGGCGGGTTT CGCCTGCACC
CGGGTGGACC GGAACGGGAT CGCGAACCTC TTTGCCCGGT GGGGCGAAAA GGGCCATGCG
CGGAGTTTCG GGTTCAACGG GCACACGGAT GTGGTGCCCG TGGGCGCGCG GGCCGATTGG
CGGTTCGACC CGTTCGGGGC GCAGGTGGAG GGTGACTGGA TGTATGGCCG GGGCGCGGTG
GACATGAAAT CCGCCGTGGC CGCCTTTGCC GCCGCGGCGA TGGATTTCGT GGCCGACACG
CCCCCCGATG GCGCGGTGAT CCTGGCGATC ACCGGGGACG AGGAGGGCGA TGCGAAGGAC
GGGACCGTCG CCCTGCTGGA CTGGATGGCG GCGCAGGGCG AGGCGATGGA TGTCTGCCTG
GTGGGGGAGC CGACCTGCCC GGACGAGATG GGCGAGATGA TGAAGATCGG GCGCCGCGGC
TCGATGACGT TTTTCTTCGA GGCGCTGGGC GTGCAGGGCC ATTCCGCCTA TCCGCACCGC
GCGAAGAACC CGCTGCCCGC GCTGGCCAAG CTGGTGGATC GGCTGGCGGG GCTGGAGCTG
GATACCGGGA CCGATCATTT CGATCCCTCG ACGCTCGCGG TGACCACCTT CGACACCGGC
AACCCGGCCA ATAACGTGAT CCCGGCGGCG TGCCGGGCCA CGGTGAACAT CCGGTTCAAC
GATGCCCATT CGTCGGAAAG CCTGACCGCG ATGGTGCGCG GGATCGCGGC GGAGGTGGCC
GCCGAGACCG GGATCGAGAT CACCGACCGG GTGTCGGTCT CGGGCGAGAG CTTCATCACC
CCCCCGGGGC GGCTGTCGGA CCTGGTCGCC GCGGCGGTGG AGACCGAGAC CGGCCGGGTG
CCGGTGCTGT CGACCTCTGG CGGGACGTCG GACGCGCGGT TCGTGCAGCA CCACTGCCCG
GTGGTGGAGT TCGGCCTTGT GGGCAAGTCC ATGCACCAGG TGGACGAGCG GGTGGCGATT
GCCCAGATCC CGCAGCTCAA GGCGATCTAC ACCCGGATAT TGCGCGACTA TTTCGCATGA
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| Protein sequence | MTDPVALTAD LIRCPSVTPE EGGALSLLEA RLSAAGFACT RVDRNGIANL FARWGEKGHA
RSFGFNGHTD VVPVGARADW RFDPFGAQVE GDWMYGRGAV DMKSAVAAFA AAAMDFVADT
PPDGAVILAI TGDEEGDAKD GTVALLDWMA AQGEAMDVCL VGEPTCPDEM GEMMKIGRRG
SMTFFFEALG VQGHSAYPHR AKNPLPALAK LVDRLAGLEL DTGTDHFDPS TLAVTTFDTG
NPANNVIPAA CRATVNIRFN DAHSSESLTA MVRGIAAEVA AETGIEITDR VSVSGESFIT
PPGRLSDLVA AAVETETGRV PVLSTSGGTS DARFVQHHCP VVEFGLVGKS MHQVDERVAI
AQIPQLKAIY TRILRDYFA
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