| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0006 |
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| Symbol | dapD |
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| ID | 5711758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 9028 |
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| End bp | 9855 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641265900 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001531356 |
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| Protein GI | 159042562 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAACG CTCAGCTTGA AACCGCCATC GAGGCCGCCT GGGAGGCGCG CGACACGATC
TCTCCGGCCA CCACGGGCGA GACCCGCGAG GCCATCGAAG AGACCCTGAA CGCGCTGGAC
AGTGGCGCGC TGCGCGTGGC CGAACGCGGT GCGGACGGGT CCTGGCATGT CAACCAGTGG
GCCAAGAAGG CGGTGCTGCT GGGGTTCCGG ATCAAGGACA TGGAGGCGCA GTCGGGCGGC
CCCCAGGGCG GCGGCTGGTG GGACAAGGTC GACAGCAAGT TCCTCGGGTG GAACAGCGGC
GCCTGGGAGA AGGCGGGCTT CCGCGCGGTG CCCAGCTGCG TGGTGCGCAA GTCGGCCTAT
ATCGCGCCGG GCGTGGTGCT GATGCCGTCC TTCGTCAATC TCGGCGCTTA CGTGGACGAG
GGGACCATGG TCGACACCTG GGCCACGGTC GGGTCCTGCG CGCAGATCGG CAAGAACGTG
CACCTGTCGG GCGGCGTGGG GATCGGCGGC GTGCTGGAGC CGATGCAGGC CGGCCCGACC
ATCATCGAGG ACAACTGTTT CATCGGCGCG CGCTCCGAGG TGGTCGAGGG CTGCATCGTG
CGCGAAGGCT CGGTGCTGGG CATGGGCGTG TTCATCGGCC AGTCCACCAA GATCGTGGAC
CGGGAGACCG GCGAAGTCAT GTATGGCGAG GTCCCGCCCT ACTCCGTGGT GGTCGCCGGG
TCCATGCCGT CGAAGAACGG CGTCAACCTC TACTGCGCGG TGATCGTGAA ACGCGTGGAC
GAACGCACCC GCTCCAAGAC CGGCATCAAC GAGCTGCTGC GCGATTAA
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| Protein sequence | MSNAQLETAI EAAWEARDTI SPATTGETRE AIEETLNALD SGALRVAERG ADGSWHVNQW
AKKAVLLGFR IKDMEAQSGG PQGGGWWDKV DSKFLGWNSG AWEKAGFRAV PSCVVRKSAY
IAPGVVLMPS FVNLGAYVDE GTMVDTWATV GSCAQIGKNV HLSGGVGIGG VLEPMQAGPT
IIEDNCFIGA RSEVVEGCIV REGSVLGMGV FIGQSTKIVD RETGEVMYGE VPPYSVVVAG
SMPSKNGVNL YCAVIVKRVD ERTRSKTGIN ELLRD
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