| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3193 |
|---|
| Symbol | |
|---|
| ID | 5696055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3824851 |
|---|
| End bp | 3826239 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641265812 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001531073 |
|---|
| Protein GI | 158523203 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCA TTGGGCTGCC AAAGCTTGCT GACTTCAAAG ACCGGTTTCT GGACCGGTTT
TTCGGGTTGA CCATCGCCAC CCGCATGACC CTGGCCTATC TTCCCCTGGC GATTATCATC
GTTCTTATCT CGGTCTACAC CCTCTCCTCT CTGAGTGAGC TGGGCGATAT CAGCCGCAGC
ATTGTGACCG GCGACATGGT GGTGATCGAG GCCACGGACA GCCTCACCCA GAACCTGCTG
GCCCAGGAGG CCTATGGCCG CCGTTACCTG ATCATGAAAA GCGATGAAAT GAAAGAGCTG
TTTCAAACCC GCAGCACCGA GATCGACAAT ACCCTTGACA CTCTGGCCCG GGTGGACGAG
ATGGATCTGT CCCTTATCAG GAGTTTGAAG GCCCGCCACG ATGATTTTAC CGCCCTTTAT
GCCGGGATTT TCGATCTGCC GGAAAAGGAG CTGGCCACGG CCGGCGCTGT GTATGACGAC
CGGATTCGCC AGGGCCTGGA TGATCAGCTG GCAATCATAA AGGCCATGAC ACAGGAGGCC
AGGGAGGGGC TGGCGCAAAA AAGCCGGCGG ACCGATGCGG CCAGCATGAG GGCCTTTCAC
GTGGCAGCCC TGCTGTCGGC CCTGGGTATC TGCCTGGGCA TCGGGTCGGC CTACATCATC
ACGCGCAGCA TGTCCCGCTC CATTGCCCAG CTCAAGCTGG CCACGGCCAA GTTTTCCGAG
CGGCAGTTCG ATTTTGTCCC TGACCTGCGG CAGAAGGATG AGTTCGGCAT GCTGGCCAGG
GCCTTTATCG CCATGGCCCA GCGCCTTGCC CGGCTGGAGG TGATGGATCT GGACGCCAGC
CCCCTGACCC GGCTGCCCGG CGGCGTGGCC ATTGAAAATG TGCTGGAGAC CCGTCTGGCC
CAGCAGCAGG ATATCGCCTT CTGCCTGGTG GATATCGACA ACTTCAAGGC GTTTAACGAC
CGGTACGGTT ATGCCAGGGG CAACGAGGTG ATCAAGGCCA CGGGAAAGAT ACTGGAATCG
GCCATTGCCG ACCACGGTAC TGAAGACGCC TTTGTCGGCC ATATCGGCGG CGACGATTTT
GCGGTGATCC TTCACCCGGA CCGGTATGGC CAGGTGTGCC AGGCCATCAT CGAGGCATTT
GACAGAAAAT CCCCTACGTT CTATGATCCC GAAGACAGAG ACAGGGGTTA TGTCATCGCC
AAAACACGGC AGGGAAAGCA GGAGCAGTTT CCCCTTATGA CGGTCTCCAT TGCGGTGGTG
ACCAACCTGA GCCAGAAGGA GATCAACAGC GTGCGGATCG GCGAGGTTGC GGCGGAACTC
AAGGAGTATG CCAAGACCGT TCCGGGCAGC CTCTTTCTGG TAGACCGGCG GGAACACCCC
TCCGCTTGA
|
|---|
| Protein sequence | MKTIGLPKLA DFKDRFLDRF FGLTIATRMT LAYLPLAIII VLISVYTLSS LSELGDISRS
IVTGDMVVIE ATDSLTQNLL AQEAYGRRYL IMKSDEMKEL FQTRSTEIDN TLDTLARVDE
MDLSLIRSLK ARHDDFTALY AGIFDLPEKE LATAGAVYDD RIRQGLDDQL AIIKAMTQEA
REGLAQKSRR TDAASMRAFH VAALLSALGI CLGIGSAYII TRSMSRSIAQ LKLATAKFSE
RQFDFVPDLR QKDEFGMLAR AFIAMAQRLA RLEVMDLDAS PLTRLPGGVA IENVLETRLA
QQQDIAFCLV DIDNFKAFND RYGYARGNEV IKATGKILES AIADHGTEDA FVGHIGGDDF
AVILHPDRYG QVCQAIIEAF DRKSPTFYDP EDRDRGYVIA KTRQGKQEQF PLMTVSIAVV
TNLSQKEINS VRIGEVAAEL KEYAKTVPGS LFLVDRREHP SA
|
|---|
| |