| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3178 |
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| Symbol | |
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| ID | 5696040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 3802913 |
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| End bp | 3804649 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641265797 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001531058 |
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| Protein GI | 158523188 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGAA TACGACGCAT ATACGACGAC GCGGCCCCGG CCAACCGGAC AGCCATCGCA
ACGGTCCAGC AAATTCTGCG GGACCGGTTC CCCCTGCTCC ACCCCGACGA GGTGGACCAT
CTTCTGGAAA AACTGAAAAA CCCGTTAAAA TACCGCTTCC GGTCCATCCT GTTCGTGGCG
GATGTCAAGC GGGCCATACG GGGGTTTGCC CTGCTGATGC ACGCGCCGGA CCTGAACTTC
TGTTTCCTGG ATTTCATCTC CACGGCCCAG CATCAGGCCG GCCGGGGGCT GGGCAACGCC
CTCTACGACA GAATCCGGGA AGAAGCGGCC CGACTGGGGT GCCGGGGCCT TTTTTTTGAA
TGTCTCCCTG ACGATCCGGC CCTGTGTACC GATCCCGAAG TTCTCAAACA GAACGCCCGC
CGTCTCAAGT TTTACGAAGC CTGGGGGGCA CGGCCCCTTG CCAACACCCG TTATGAAACA
CCGGTCCGGA AGAATGATGA CAACCCGCCC TTTCTGGTGA TCGACACCCT GGGCCGGGAC
ACCACCTTTG CCAGAAAGGA GACGCGGGCC ATTGTGCGGG CCATTCTGGA ACGCAAGTAC
CCGGACGTGT GTGACCGAAA ATATGTCCGC ATGGTGGTCG GCTCCATCAC CGACGACCCG
GTACGGCTCC GGCCCTTCCG GTATGCAAAA AAGAAAACTG TTGAGCCGGT GAAAAAAGCC
CTGCCCGAAG ACCAGCGCAT CGGCCTTGTC TATAGCGCCA ACCACCAGAT CCACCATGTG
CGGGAGCGGG GCTACGTGGA GTCGCCGGTG CGCGTAAAAA GCATTCTCAA GCACCTGGAA
CGGTCCGACC TGTTTTCCGT GCTGCCGGTG CGCCACTTTG CCGATGACCA TATCACCGCC
GTTCATGACA AACACTTTGT CCGGTATCTT CAGGCCGCCT GCGCATCCGT GCCGGAAAAC
GAGTCCATCT ATCCTTACGT GTTTCCCATC CGCAACAGCA CCCGGCCTCC GAAGTCCCTT
CCCATGCGGG CCGGGTACTA CTGCATCGAC ACCTTCACCC CGCTGAACCG GAGCGCTTAT
GCCGCGGCCC GTCATGCCGT GGACTGCGTG CTGACCGGGG CCGACGACCT GCTGGAGGGC
CGATACCTGG CCTATGCATT GGTGCGGCCC CCCGGCCACC ACGCCGAAAC CAGCATGTTC
GGGGGGTTCT GCTATTTCAA CTCCGCGGCC ATCGCTGCCC ACTACCTGAG CCGCCACGGC
CGGGTGGCGA TTTTGGACAT TGACTATCAC CACGGCAACG GCCAGCAGGA AATCTTTTAC
CGACGCGCCG ATATCTTTAC CCTCTCCATT CACGGCCATC CCCGCTTCAC CTACCCCTTT
TTCAGCGGAT TTGCCGAGGA GACCGGAGAG GCGGGGGGCA AGGGCTTCAA CCTCAACCTG
CCCCTGCCGG AAAACAGCAC CGCCGCTACC TATCTTCAGG CCATAAAACG CGCGTTAAAT
CGCCTGCGGG CCTTTGCCCC CCAGTTTGTA GTGGTGGCCC TGGGATTTGA CACGGCCAAG
GGGGACCCCA CCGGCACCTG GCCCCTGGAC GCGGCCGACT ATGAAGAGAT CGGCGATTTG
ATCGGCAGCC TTCCCCACGC CACTCTTTTT GTGCAGGAAG GGGGATACAA CACCCGAACC
CTGGGGAAAA ACGCGGCCCG CTTTTTTGCG GGCATATGGA AAGGATCATT CACATAG
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| Protein sequence | MFRIRRIYDD AAPANRTAIA TVQQILRDRF PLLHPDEVDH LLEKLKNPLK YRFRSILFVA
DVKRAIRGFA LLMHAPDLNF CFLDFISTAQ HQAGRGLGNA LYDRIREEAA RLGCRGLFFE
CLPDDPALCT DPEVLKQNAR RLKFYEAWGA RPLANTRYET PVRKNDDNPP FLVIDTLGRD
TTFARKETRA IVRAILERKY PDVCDRKYVR MVVGSITDDP VRLRPFRYAK KKTVEPVKKA
LPEDQRIGLV YSANHQIHHV RERGYVESPV RVKSILKHLE RSDLFSVLPV RHFADDHITA
VHDKHFVRYL QAACASVPEN ESIYPYVFPI RNSTRPPKSL PMRAGYYCID TFTPLNRSAY
AAARHAVDCV LTGADDLLEG RYLAYALVRP PGHHAETSMF GGFCYFNSAA IAAHYLSRHG
RVAILDIDYH HGNGQQEIFY RRADIFTLSI HGHPRFTYPF FSGFAEETGE AGGKGFNLNL
PLPENSTAAT YLQAIKRALN RLRAFAPQFV VVALGFDTAK GDPTGTWPLD AADYEEIGDL
IGSLPHATLF VQEGGYNTRT LGKNAARFFA GIWKGSFT
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