| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3066 |
|---|
| Symbol | |
|---|
| ID | 5695926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 3674489 |
|---|
| End bp | 3675877 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641265683 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001530946 |
|---|
| Protein GI | 158523076 |
|---|
| COG category | [R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1090] Predicted nucleoside-diphosphate sugar epimerase
[COG4276] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01777] conserved hypothetical protein TIGR01777 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000836111 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCACCG ACACCTTCAC ACGGCAGTCG ATCATTGATG CCGACGCGCG CACTCTGTTT
TTATGGCATG CCCGGCCTGG CGCCATTGAA CGGCTCAGCC CGCCCTGGGA CCCCCTGGAG
GTGATCTTTC GCACCGGCGG CATTACTGTC GGCGCCCGGG TGGTACTGAA GATGTTTGCC
GGCCCGGTGC CCTACCGGTG GCACGCCCGG CATACCGTGT ATGAAGAAAA CCAAAAATTC
GTGGACGAGC AGGTCAAAGG GCCCATGGCC TTCTGGCGTC ACACCCACGC CTTTGAGCCG
GCCGGAGAAA ACCAATGCCG GCTCATCGAC ACCATTGATT ATCGCCTGCC GCTTTATCCC
CTTACCCGTT TTCCCGGCAA GCTCCTGGTG GAGAACAAAC TTGCCCGCAT CTTTGCCTGG
CGTCACCGGA TCACCGCCTT TGACATGGCC CTGCACCGGC GGTTTAACAA AAAGGGGCCC
ATGACCGTGC TGATCTCCGG GGCCAGCGGA GTCCTGGCAT CAGCCCTGAT CCCCCTGCTC
ACCACCGGTG GCCACAGGGT GGTCAGGCTG GTGCGCCGCA AACCGTCGGC CGAAAACGAG
GTGTTCTGGA ACCCGGCCGA CAATGTCATT GACACTGATG CCTTGAAAAA CCATACCATT
GACGCGGTGA TTCACCTGGC CGGCGAGCAT GTGGGCACCG GACGGTGGAC GGACGCCAAG
AAAAAAACCA TTATCGACAG CCGGCAGCAG GGCACCCGTC TTCTGGCCGA AACTGCGGCC
CGGCTCTCCC CCAGGCCCGG GGTTTTTCTC TGCGCCTCGG CCACCGGATT TTACGGTGAA
CGGGGAGAGG CCGTGCTGAC GGAAAATGAC GGGCCGGGAA ACGATTTTCT GGCAAAGGTG
TGCAAAATAT GGGAAGCCTC GGTCCAGCCG GCAACGGACG CCGGCATTCG CACCGTTCGC
ATGCGCATCG GTGTGGTGCT TACACCAAAA GGCGGGGCCC TGCAGCGGCT GCTTCTGCCC
TTTCAGCTCG GCATGGGTGG CCGCCTGGGA AACGGCCGCC AGTATTTAAG CTGGATCGGT
ATTGATGACG CCATCGGCGC CATCTTTTAC CTGCTGATGA ATGAGACGGT CAGCGGGCCG
GTCAACGTGG TATCCCCTTC CCCGGTCACC AACGCCGAAT TTACCCGGAC CCTGGCAACG
GTGCTTTGCC GTCCGGCCTT GATGCCGGTG CCGGCAACGG CCATTGACCT TGCCTTTGGC
GAAATGGGTA CCACCGTGCT GCTCACCAGC ACCCGGGTGG CGCCGTCAAA ACTGACAGAA
TCCGGCTACT GTTTCGGCTG GCCCGATCTT GAAAGCGCAC TGCGCCACAT TCTGGGAAAG
ACACGTTAA
|
|---|
| Protein sequence | MITDTFTRQS IIDADARTLF LWHARPGAIE RLSPPWDPLE VIFRTGGITV GARVVLKMFA
GPVPYRWHAR HTVYEENQKF VDEQVKGPMA FWRHTHAFEP AGENQCRLID TIDYRLPLYP
LTRFPGKLLV ENKLARIFAW RHRITAFDMA LHRRFNKKGP MTVLISGASG VLASALIPLL
TTGGHRVVRL VRRKPSAENE VFWNPADNVI DTDALKNHTI DAVIHLAGEH VGTGRWTDAK
KKTIIDSRQQ GTRLLAETAA RLSPRPGVFL CASATGFYGE RGEAVLTEND GPGNDFLAKV
CKIWEASVQP ATDAGIRTVR MRIGVVLTPK GGALQRLLLP FQLGMGGRLG NGRQYLSWIG
IDDAIGAIFY LLMNETVSGP VNVVSPSPVT NAEFTRTLAT VLCRPALMPV PATAIDLAFG
EMGTTVLLTS TRVAPSKLTE SGYCFGWPDL ESALRHILGK TR
|
|---|
| |