| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2895 |
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| Symbol | |
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| ID | 5695753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 3477338 |
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| End bp | 3480517 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641265510 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001530775 |
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| Protein GI | 158522905 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTCAA AATTCTTTCT AGACCGTCCG GTCTTTGCCT GGGTGATCGC CATCATCATG
ATGATCGGCG GGGGGCTGGC CATTTACAAC ATGCCCATCT CCCAATACCC GCCCATTGCG
CCGCCCTCCA TCGCCATTGA CGCCTTTTAT CCCGGGGCCT CGGCTGAAAC CGTGGAAAAC
AGTGTGGTGC AGATCATTGA GCAGAAAATG ACCGGGTTTG ACAAGCTGCT CTACATGACG
GCCAGCAGCG ACGCCTCGGG GTCGGGCCGC ATCGAGCTCA CCTTTCAGCC TGGCACCGAT
CCCGACCTGG CCTGGTCTCA GGTGCAGAAC AAGCTGCAAC TGGCCATGTC CAGCCTGCCC
GACGTGATTC AACGCCAGGG CGTCAAGGTC AGCAAGTCCA CCCGCAACTA CCTGCTCATC
GTGGGCCTGA TCTGCGATGA CGGCAGCATG AACGGCAACG ACCTGCGCGA CTACGCCCAG
TCCAGCCTGG AAAAGGTGCT GGCCCGGGTG CCGGGCGTGG GCGAAGTGGA GAGCTTCGGG
AGCCAATATG CCATGCGGGT CTGGCTGGAT CCGGACAAGC TGAACAGCTA TCACATGACC
ATTGAGGATG TGATAGCGGC CCTTCGCGTC TATAACGTGG AGGTATCCGC CGGCCAGTTC
GGGGGCATGC CCTCGGTGAA GGGCCAGCGG CTCAACGCAT CCATCATCGT TCAGAGCCTT
TTGAAAACCC CGGAAGAGTT TGCCGACATC CCCCTGCGCA TCGACGCCGA CGGTGCTGTT
GTGCGGCTGG GGGATGTGGC CCGCACCGAA CTGGGCACCG AGCGGTATGA CGTGGATGCC
CTGTTCAACG GTAATCCCGC CGCCGCCCTT GCCATCCGGC AGGCAGCCGG CGCCAATGCC
CTGGACACCG CCGACGCCAT TCGGGCCAAG CTGGACGAAC TTTCCGAATA CTTTCCCCCA
GGCGTGAAGG TATTCTACCC TTTTGATACC ACGCCCTTTA TCAGGGTGGC CATCGACGAC
GTGGTCAAGA CCCTTTTTGA GGCCATCCTC CTGGTGTTCC TGATCATGTT CCTCTTTCTG
GGCAACATTC GGGCCACCCT GATTCCCACA CTGGCCGTGC CCGTGGTAAT TCTGGGTACC
TTTGCCGTGC TGGGCTTTTT CGGCTATACC ATTAATATGC TCACCATGTT TGCCATGGTG
CTGGCCATCG GCCTGCTGGT GGACGACGCC ATCGTGGTGG TGGAAAACGT GGAGCGGATC
ATGCACGATG AGGGACTTGG CCCCCGCCAG GCAACGGCCA AGTCCATGGA AGAGATCACC
TCCGCCCTGA TCGGCATCGG CCTGGTGCTG GCCGCTGTGT TTGGGCCCAT GGCCTTTTTC
GGCGGTTCCA CCGGTGTGAT CTACCGCCAG TTTTCCGTGA CCATCATCGC GGCCATGCTG
CTCTCCGTGG TGGTGGCCCT GATCCTCACC CCGGTGCTGT GCGCCTCCCT GCTGCGGCCC
GTGGCCATGC GGGAGGAAAA AGCGAAAACC GTCCTGGCGC CCTTTCGCCG GTTTTACCAC
CGCTTCGACA AGGGGTTCAA CTGGGCCCGG GACCGTTATG GAGCCGCCAT CGGCAACATT
CTGCAGCGCC GGTACCGGTA CATGGTCCTT TACCTGCTGA TCGTGGCGGC ACTGGCCTTC
CTGTTTCTGC GCATGCCCAC CGCCTACCTG CCGGACGAGG ACCAGGGGGT GATGCTTTTC
CAGGCCCAGT TGCCATCCGG CTCCACAGAG GAACAGACCA GCAAGGTGTT AAACGAAGTG
AAGGCCTATT TTCTGGAAAA CGAGACCGAG GCCGTGGACT CGGTCATGAC CCTGTCGGGC
AGAAGCTTTG CCGGCGGTGG CCAGAACGTG GGCATGGGGT TTGTCCGGCT TAAGGACTGG
GATTTACGGG ACCGGCCCGA CCTGAAGGTC AAGGCTGTGG TGGGCCGGGC AATGGGACGG
TTCTCACAAA TTCACAACGC CCGGGTGTTT GCTTTTGCCC CGCCCTCGGT GCCCGAACTG
GGCACGGCCA CCGGTTTTGA GTTTCAGCTT CAGGACCGGG GCGGCATCGG CCACGAAAAG
CTGATGGCGG CCCGAAACCA GTTGCTGGGC ATGGCGTTCG CGGACCCGCG GCTGACCCGG
GTGCGGCCCA ACGGCATGGA GGACGTGGCC CAGTACCGCA TTGACGTGGA CTGGGACAGG
GCCGGAGCCA TGGGGGTTCC CATCAACGCC ATCCACAACA CCATTGCCGC CTCCTTTGGC
GGGGCTTATG TGAACGATTT TATTCAGGGC GGCCGGGTCA AGCGGGTCTA TGCCCAGGCC
GACGCCCCTT ACCGCATGCT GCCCGAAGAC CTGGAGCGGC TCTACGTGCG CAATCGGTCA
GGCACCATGA CCCCGCTGTC CGCCTTTGCC AGCGGAAACT GGGAGTATGG CTCTCCGCGC
CTTGAACGGT TCAACGCCTT TCCTTCTATG AACATTCAGG GTGAGGCGGC GCCGGGAAGA
AGTACCGGCG AGGCCATGGC CGCCATGGAG GAGATTGCGG CCCGGCTGCC CGAGGGCCTG
GGGTTTGACT GGAGTGGGAT CTCCTACCAG GAGCGCATGG CCACGGCCCA AACCGGCCTG
CTTTACACCT TTTCCACCAT CGTGATCTTC CTCTGCCTGG CGGCCCTGTA CGAGAGCTGG
ACCGTTCCCA TCTCCGTCAT GCTGGCCCTG CCCCTGGGCC TGATCGGCGG GATGATCGCC
TCCATGCTAC GGGGCTTTCC CAATGACGTC TATTTTCAGA TCGGCCTGCT CACCGTGGTG
GGGCTCACCA CCAAGAACGC CATTCTGATC GTTCAGTTCG CCATGGCCAA ATCCGCCGAG
GGCATGCGGC TGGTGGACGC CACCCTGATG GGGGCACGGC TGCGGCTGCG GCCCATTGTG
ATGACCTCCA TGGCCTTTGG TTTCGGCGTT CTGCCCCTGA CCCTGGCCAC AGGTGCCGGG
GCCGGGGCAC AGACCGCCAT CGGCACCGGT GTGCTGGGCG GTATGATCAC CGCCACCTTT
CTGGCGATCT TTTTCATTCC GCTTTTTTAC GTGATTGTGG TCAACCTGTT TGGCCGGAAA
AAAGGCGCAA CCTCGGAAAC CGTGGCCTTT TCTTCGGAAA CCACGCCCAG GGAGTTGTAA
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| Protein sequence | MLSKFFLDRP VFAWVIAIIM MIGGGLAIYN MPISQYPPIA PPSIAIDAFY PGASAETVEN
SVVQIIEQKM TGFDKLLYMT ASSDASGSGR IELTFQPGTD PDLAWSQVQN KLQLAMSSLP
DVIQRQGVKV SKSTRNYLLI VGLICDDGSM NGNDLRDYAQ SSLEKVLARV PGVGEVESFG
SQYAMRVWLD PDKLNSYHMT IEDVIAALRV YNVEVSAGQF GGMPSVKGQR LNASIIVQSL
LKTPEEFADI PLRIDADGAV VRLGDVARTE LGTERYDVDA LFNGNPAAAL AIRQAAGANA
LDTADAIRAK LDELSEYFPP GVKVFYPFDT TPFIRVAIDD VVKTLFEAIL LVFLIMFLFL
GNIRATLIPT LAVPVVILGT FAVLGFFGYT INMLTMFAMV LAIGLLVDDA IVVVENVERI
MHDEGLGPRQ ATAKSMEEIT SALIGIGLVL AAVFGPMAFF GGSTGVIYRQ FSVTIIAAML
LSVVVALILT PVLCASLLRP VAMREEKAKT VLAPFRRFYH RFDKGFNWAR DRYGAAIGNI
LQRRYRYMVL YLLIVAALAF LFLRMPTAYL PDEDQGVMLF QAQLPSGSTE EQTSKVLNEV
KAYFLENETE AVDSVMTLSG RSFAGGGQNV GMGFVRLKDW DLRDRPDLKV KAVVGRAMGR
FSQIHNARVF AFAPPSVPEL GTATGFEFQL QDRGGIGHEK LMAARNQLLG MAFADPRLTR
VRPNGMEDVA QYRIDVDWDR AGAMGVPINA IHNTIAASFG GAYVNDFIQG GRVKRVYAQA
DAPYRMLPED LERLYVRNRS GTMTPLSAFA SGNWEYGSPR LERFNAFPSM NIQGEAAPGR
STGEAMAAME EIAARLPEGL GFDWSGISYQ ERMATAQTGL LYTFSTIVIF LCLAALYESW
TVPISVMLAL PLGLIGGMIA SMLRGFPNDV YFQIGLLTVV GLTTKNAILI VQFAMAKSAE
GMRLVDATLM GARLRLRPIV MTSMAFGFGV LPLTLATGAG AGAQTAIGTG VLGGMITATF
LAIFFIPLFY VIVVNLFGRK KGATSETVAF SSETTPREL
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