| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2866 |
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| Symbol | |
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| ID | 5695724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 3452103 |
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| End bp | 3453083 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641265481 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001530746 |
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| Protein GI | 158522876 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000362833 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATCG GGCCGGTTTT TCTGGCGGGA CGCACCATTC TTGCTCCCCT GGCCGGCATT
ACCGATGCCC CTTTCCGCCG GCTGGCCAAG GCAGCCGGCT GTGCCCTTGT CTACTCCGAG
ATGGTCAGCA GCCACGGTCT TTTTTACCAG TCTGAAAAAA CCGGGGCCAT GCTGCGCACC
ACTCCTGAAG AAGCCCCCTT TGCCGTCCAG ATTTTCGGCG GAAAACCCGC TGTCATGGGC
CGGGCCGCCG CAATGGTCCA GGCCTCCGGT GCTCACATGA TCGACATAAA TTTCGGCTGC
TCGGTAAAAA AGATTTTAAA ATCCGGAGCA GGGGCGGCCC TGATGAAGGA CCTGCCCCTG
GCCGCGGAGG TGATCCAGGC GGTGCGGGAC GCCGTCTCCA TTCCCCTGAC CATCAAGATG
CGAAGCGGCT GGAACCCGGA CGGCAGCGAT GCCTTTCACC TGGCCGAAAT TGCCGAGGCC
CGGGGCGTCA ACGCCGTGGC CCTTCACCCC CGCACTGCCA CCCAGGGGTT CGGGGGCACG
GCCGACTGGT CCCTGATTGC CGCCTTAAAA CAGCGGACCG GCCTGCCGGT GATCGGCAAC
GGGGACATTG TTCTCCCGGA AGATGCCCGG CGCATGCTGG ACCAGACCGG GTGTGACGCG
GTGATGGTGG GCCGGGCCGC CATCGGGGCG CCCTGGATTT TTAAACAGAT CAATGCCTGC
CTGGCCGGCA AACCGGTTGT GGAACCTTCC CTGGAGCACC GGTTTGAGGT GATGTCCGAA
TATATCAACG CCATGGTGGC GCATTATGGT GAGGACCTTG CCTGCCGGGT GATGCGCAGC
CGCCTGGGCT GGTTTACCAG GGCCATGCCC CACGGCACCC TGTTTCGCGA GTCGATCAGG
CGGATTGAGA CAAAAGACCA GGTCCTGGCC GCCGTGTCCG ATTACAGGGA GCGCCTGGCT
GCCGGTGGTT TTTTGCCGTG A
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| Protein sequence | MRIGPVFLAG RTILAPLAGI TDAPFRRLAK AAGCALVYSE MVSSHGLFYQ SEKTGAMLRT
TPEEAPFAVQ IFGGKPAVMG RAAAMVQASG AHMIDINFGC SVKKILKSGA GAALMKDLPL
AAEVIQAVRD AVSIPLTIKM RSGWNPDGSD AFHLAEIAEA RGVNAVALHP RTATQGFGGT
ADWSLIAALK QRTGLPVIGN GDIVLPEDAR RMLDQTGCDA VMVGRAAIGA PWIFKQINAC
LAGKPVVEPS LEHRFEVMSE YINAMVAHYG EDLACRVMRS RLGWFTRAMP HGTLFRESIR
RIETKDQVLA AVSDYRERLA AGGFLP
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