| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2811 |
|---|
| Symbol | |
|---|
| ID | 5695668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3391485 |
|---|
| End bp | 3392981 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641265425 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001530691 |
|---|
| Protein GI | 158522821 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.782124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGATA GGCAACGCAT GAAGATTCTG GTGGTGGATG ACGAAAAGGA TATCCGCGAG
GGGTGTGTCC GCGTGCTCCG GCGCCTGGAC TGTGAAGTGT CCATGGCGGC GAACGGCCAC
GAGGCCCTGG AGCTGCTGGG CCGGGAGTTT TTTGACGTGC TGCTGTTGGA TCTGAAGATG
CCCGGCATCG ACGGCATGGA TGTGTTGCGG GAGATTCAGC AGCAGGAGCG GGATATCCTG
GTGATCGTGA TCACCGGCTT TGCCACGGTG GAGACCGCCA TCGAGGCCAT GAAACAGGGG
GCCTACGACT TTATTCCAAA GCCCTTTGAC CCGGCCCAGC TGCGCATCGT GGTGGAACGG
GCACTGGACA AGATTCGCCT GATCCATGAG ACCGAGCAGC TGGCCCTGGA GCGGAGCCGG
ACCCTGGCCG ACCTGGGCAC GGAAAAGAGC CGGATCAGCG CCATTGTGGA GTCCCTTCCC
ACCGGCGTGG CGGTTACCGA TAAAAACGGT ACCGTGGTGC TGATGAATCC GTCGTTCAAG
CTGCTGGTGG GGCTGGCACC GGAAACCGCT CCCGGTGCCG ACATCGCCAC TTACATCGAA
GATCCGGTGC TTTGCGACAT GGTGCGGCGC ACGGCCAGGG GCGATAACGG CGGCGCCGCC
GACCTGTTTA CCCACGAACT GAGCATCGGC GGGGAAAAGT ATCTTATTGC CCGGGGCCGC
CCGGTCCAGG CCGAAACCGG CGAGTGCATC GGCACGGTGG TGACCCTGGG CGACATCACC
TCCATCAAGC TGCTCGATCA ACTCAAGTCC GAGTTCGTGG CCAAGGTGTC CCACGAACTC
CGGTCCCCGC TCTCCACCAT TCACGAGCAG CTGGGCGCGG TGCTGCGGGA CATGGCCGAA
GAAAACGACG ACAACGAGGA TCAGTACATC CTTTCCCGGG CCAAGGAGAA GACCGGCGGC
CTGATCGCCC TGATCGGGGA CCTGCTGGAT CTGTCCCGCA TCGAGTCCGG CGGCGTGACA
CACAACATTC AGCCGATCCG GCTGGAAAAC CTGCTTGCCA GCATCGTGGA CTTCATGCAG
TCCCGGGCCG CGGCCAGAGA GCAGAGGCTT TCCCTGGAGC TGGGGACCGG GCCGTTTCCC
GAGCTGACCG CCGACCCCCT GGCCCTTGAA AGCATCTTTG GCAACCTGGT GGCCAACGCC
CTTCAATACA CGGGCAACGG CGGTTCCGTT GTGGTGCGGG CCGACATGGA GGATGGGTTT
TTCAGGGTGT CTGTGGCGGA TACCGGGTTC GGTGTCGCCG AGCAGCACAG GGAGAAGATT
TTTGAAAAGT TTTTCCGGGT CAAGGACGAG AACACCCGGT TTATCACGGG CACCGGCCTG
GGCCTGCCCA TTGTGAAAGG GCTGGTGGAG CAGATGGGCG GCACCATTGA CCTTGCGAGC
CAGCCCGGCA AGGGCAGCAC CTTTACCGTC AGGCTGCCGG CGCCCAGAAA CGTTTAG
|
|---|
| Protein sequence | MDDRQRMKIL VVDDEKDIRE GCVRVLRRLD CEVSMAANGH EALELLGREF FDVLLLDLKM
PGIDGMDVLR EIQQQERDIL VIVITGFATV ETAIEAMKQG AYDFIPKPFD PAQLRIVVER
ALDKIRLIHE TEQLALERSR TLADLGTEKS RISAIVESLP TGVAVTDKNG TVVLMNPSFK
LLVGLAPETA PGADIATYIE DPVLCDMVRR TARGDNGGAA DLFTHELSIG GEKYLIARGR
PVQAETGECI GTVVTLGDIT SIKLLDQLKS EFVAKVSHEL RSPLSTIHEQ LGAVLRDMAE
ENDDNEDQYI LSRAKEKTGG LIALIGDLLD LSRIESGGVT HNIQPIRLEN LLASIVDFMQ
SRAAAREQRL SLELGTGPFP ELTADPLALE SIFGNLVANA LQYTGNGGSV VVRADMEDGF
FRVSVADTGF GVAEQHREKI FEKFFRVKDE NTRFITGTGL GLPIVKGLVE QMGGTIDLAS
QPGKGSTFTV RLPAPRNV
|
|---|
| |