Gene Dole_2475 details

Gene Information

• Locus tag: Dole_2475
• ID: 5695325
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 3002260
• End bp: 3004158
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641265083
• Product: peptidoglycan-binding LysM
• Protein accession: YP_001530356
• Protein GI: 158522486
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF; [COG5010] Flp pilus assembly protein TadD, contains TPR repeats

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00625277
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCCGAC ATCTTTTCAT CGCCGCTGCT TTAACCTTCC TGCTGACCGC CGGATGCCCG 
GCGCCGGTCA CCACCCTGCA AAAGGGCGGT CCGGCAAAAC CGGCCCGCAC CCCGTCGGCC 
AACAGTTACT ATCTTTTCAC CCAGGCCCAG ATTGAAAAAG AGAAAGGGAG CCTGGATTCG 
GCCACTGCCT GGATGACCAG GGCCGTGGCC GCGGACCCGG ACTCGGCCTA CCTGAAAAGA 
GAGCTGGCCA TTCTCTTTTT GATGAAAAAG GAGAACGACC GGGCACGGCA GACGGTTGAA 
CAGCTGCTGG CGGTCCATCC CGACGATGTG GACGGACAGA TCCTGCTGGC CGGTATCCTG 
CACCATCAGG GCGACCTCCA GGGCGCGGCC CGCCTTTACG AGCAGGCCCT TGAAAACGAC 
CCCGACCAGG AAGGCCTCTA TCTTGTGCTG GGCAACCTTT ACACGGAACA GGGGCAGATG 
GAATCGGCCG CTGGCGTTTA CGAAAAAATG ACCCGGCATT TTCCAGACCT ATGGGACGGC 
CATTTCTTCC TGGGCAACAC CCGCAAAGAG ATGGGCCTTG CAAAAGAAGC GGAGAAAAGC 
TACAAAACAG CCATCCGGCT CAACCCGGAA GCCTTAAGCC CGCGGTTTGC CCTCCTGGAC 
CTGTACGAAC GGCAGACGCC GCCCACCGGG CCCGTCACGG TAACGGTAAC GTCCGGGGAC 
ACCCTGTTTT CCCTCTGCCG CCAGGTCTAC GGCAACTGCT CCCGGCGCCT GCTGGACCGT 
ATTGCCGCAG CAAACCCTTC CATCACCGAC ATGGACCGGC TGAACGTGGG CCAGACCCTT 
CAAATGCCGC CACAGGAAGG CTCCGCGCAC AACCGGCGGC AGGTTATCGA CCTGTATACC 
GACCTGCTGC GTGATAACCC GGACAATTAC CGGGCCGCCT TTGGCCTGGC CCTTCACCAC 
CATGCAGCCG GAGACGTCGA CGCGGCCCTG AAGATACTAA AGCCCCTGGG GCCCAAAAGT 
GATGAAACCC CGGGCGTGCT CCAGCCCCTG TTTCAGTACT ATATCGACCG GGGGAAATAC 
CCGGAGGCCG AGATCCTGGT CAACGGCATG CTGACCGGCG CCCCGGACAG CTCGGCCTTG 
AACTATCTGA TGGGCATGGT GCAGGACCAG CGGGAAAATA AAGAAGCGGC TATTCGATTT 
CTCGCAAAGG TCCGCCCCAA AAGCCGGTTC TACGACAATG CCCGGTTTCA CATGGCCCTG 
CTCCACCAGA GCATGGGAAA TACCGGTCAG GCCATAGAGA TCCTTGCCGC CCGCATCACC 
GACGAACCCG ACGATGTCGA CCACCTGCTC CGGCTGGGGG TGCTCTACGA AGAGGAGGAA 
GAATACGGGA AGGCGGAAGA TCTGTTTGAA CGGGGCCTTG CCATAAATCC GGACCATGTG 
GAACTGCTCT TTCGCCTGGG CGTGGTCTAC GATAAAACCG ACCGCAAAGA GGCCCTGATC 
ACCCAGATGG AAAAAGTGAT CGAAAAAGAC CCGGACAACG CCGGTGCCCT GAACTACCTG 
GGATACACCT ACGCGGAAAA GGGGGAGAAC CTTGACCAGG CCCAGGCCCT CATTGAAAAG 
GCACTGGCCC TTCAACCCGA TGACGGCTAT ATCACCGACA GCCTGGGGTG GGTCTATTTC 
AAAAAGGGAA ATGTCGAGAA GGCCGTTTAC TACCTGGAGG CAGCGGTAAG CCTGGTGCCC 
GACGACCCGG TGCTGCTGGA GCACCTGGGG GACGCCTACC GGGAACAGGG AAACACGGAA 
AAGGCCCTGG AGATGTACCG GCGCAGCCTG GCCAACCAGG AAAAGGACAC AACGGGAATA 
AAGGCCAAGA TTGAGGCCCT GCAAAAAGAG CTGCCATGA 

 

Protein sequence

MIRHLFIAAA LTFLLTAGCP APVTTLQKGG PAKPARTPSA NSYYLFTQAQ IEKEKGSLDS 
ATAWMTRAVA ADPDSAYLKR ELAILFLMKK ENDRARQTVE QLLAVHPDDV DGQILLAGIL 
HHQGDLQGAA RLYEQALEND PDQEGLYLVL GNLYTEQGQM ESAAGVYEKM TRHFPDLWDG 
HFFLGNTRKE MGLAKEAEKS YKTAIRLNPE ALSPRFALLD LYERQTPPTG PVTVTVTSGD 
TLFSLCRQVY GNCSRRLLDR IAAANPSITD MDRLNVGQTL QMPPQEGSAH NRRQVIDLYT 
DLLRDNPDNY RAAFGLALHH HAAGDVDAAL KILKPLGPKS DETPGVLQPL FQYYIDRGKY 
PEAEILVNGM LTGAPDSSAL NYLMGMVQDQ RENKEAAIRF LAKVRPKSRF YDNARFHMAL 
LHQSMGNTGQ AIEILAARIT DEPDDVDHLL RLGVLYEEEE EYGKAEDLFE RGLAINPDHV 
ELLFRLGVVY DKTDRKEALI TQMEKVIEKD PDNAGALNYL GYTYAEKGEN LDQAQALIEK 
ALALQPDDGY ITDSLGWVYF KKGNVEKAVY YLEAAVSLVP DDPVLLEHLG DAYREQGNTE 
KALEMYRRSL ANQEKDTTGI KAKIEALQKE LP